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2024-04-19 12:27:03, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Ciona intestinalis Myc-induced nuclear antigen with a molecular mass of 53 kDa-like 1 (mina53-like1), mRNA. (1775 bp)
db_xref="GeneID:494417" /translation="MPARLKWTDEYMKENYGDLRVKLESKYEKDFKPEGDRGMGQDSMRRFLDTYIEHDKYMVSQLPDPLSEEVTVPQPILCGSFRERILEANIWMSSGNTKSLLHRDADNAFNCLLNGTKDWILIDPVHQDLLPVAVESGSPYGGYTLINVNKVDLIEFPEFKEVPWYYANVSAGDCLFLPKGHWHQVRSYGAKNLAVSILFSRLNDFNPKGCPKEGVPPSELLSEVPMVWTYDGFEAQTMGNADPFELKDELEMKCKHAEGKLTLEMFEEDMISGLDVEEEAYKGTLKVDADEYEIPDENIEIMKQRAKAIMDLIDPENIGYYDCSQLEDMTVDTLKKISDIKDPDPANTDQYEFLHLHPNLVRKTILSSLELSKESFMEKYHSHEGSMAGAQWIFETLDSDNDGRCTVAEVKGNMEKVLERFQDSLLADVTAHQAKKINQNSKDEL" misc_feature 213..824 /gene="mina53-like1" /note="Cupin-like domain; Region: Cupin_8; pfam13621" /db_xref="CDD...
AA_position 247
NM_001032656.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis transcription factor protein (LOC778757), mRNA. (1113 bp)
gene="LOC778757" /note="upstream in-frame stop codon" CDS 50..535 /gene="LOC778757" /codon_start=1 /product="transcription factor protein" /protein_id="NP_001071818.1" /db_xref="GeneID:778757" /translation="MTDDKKEKYFSQQSKIQSGQSVIFSDEELLNLSVRDLNRHLRSLSPEESRRLKQRRRTLKNRGYAASCRIKRLTQKDELDIERIQLQNEVDRVTQENQRMKLELEAFQKKFHDLEQFAKSIGKGNSSYTGDGNVPTLLQVMRPPTTQQNGDSANTESNMIS" misc_feature 185..394 /gene="LOC778757" /note="Basic leucine zipper (bZIP) domain of small musculoaponeurotic fibrosarcoma (Maf) proteins: a DNA-binding and dimerization domain; Region: bZIP_Maf_small; cd14717" /db_xref="CDD...
AA_position 76
NM_001078350.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis uncharacterized LOC100178878 (gnrh1), mRNA. (1087 bp)
misc_feature 11..13 /gene="gnrh1" /note="upstream_AUG_codon; putative N-terminal extension: MGFIKYLYLFACISYSAIAYPTSQ" CDS 83..742 /gene="gnrh1" /codon_start=1 /product="preprogonadotropin-releasing hormone 1" /protein_id="NP_001027799.2" /db_xref="GeneID:100178878" /translation="MLDIEKDELAALLQRENSAFRDILYHKNAGSFEKSDSGKFDSLKLQNNFPHLDLGLGVDLDAVDQWNRYKQANAQRMQNLGVPVNARQHWSYEFMPGGRRAVWENANVGVPVSRQHWSYEYMPGGRRSAGQHAMTKRQHWSKGYSPGGKRSVDLSEFDDQGRRITKHEGMPEEPFKVEQPRPRNGIHGPAGLDQNEPDWKNWMNEQPAASSDDKGSDVE" ORIGIN // REFERENCE 1 (bases 1 to 1087) AUTHORS Adams BA, Tello JA, Erchegyi J, Warby C, Hong DJ,...
AA_position 6
NM_001032627.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis radial spoke protein Ci-RSP9 (ci-rsp9), mRNA. (1085 bp)
feature 121..123 /gene="ci-rsp9" /note="upstream in-frame stop codon" CDS 142..972 /gene="ci-rsp9" /codon_start=1 /product="uncharacterized protein LOC100179789" /protein_id="NP_001154962.1" /db_xref="GeneID:100179789" /translation="MDANGLHLNVDHVAGSGVILSPEQKAALQTSLIILKTHYKFNNVVLWGKILGIKDDYFIAQGSGKDELKDRKSLYSLNCIEWHLLPPATSEMKNKATMVRGRLMGDPSFEYEHTDVRRVRDGEEYTEEEVTIQIKEEDRVSAIVATIDEEASIVPRGAFIKTPLGQVYNNRSFEGLSVAECGKLSSFMHFREAQNFGNKSIKEKADLNPSIDFLDSIEDDIPKGSWSSQFERGSGLVCLRSLVWLGMTFYHVPNTTRFGCMYVGTGEKNFDIPFML" misc_feature <190..948 /gene="ci-rsp9" /note="Radial spokehead-like protein; Region:...
AA_position 65
NM_001161490.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis protein ADP-ribosylarginine hydrolase-like protein 1 (LOC100185459), mRNA. (1295 bp)
introns" /db_xref="GeneID:100185459" CDS 73..1140 /gene="LOC100185459" /codon_start=1 /product="protein ADP-ribosylarginine hydrolase-like protein 1" /protein_id="XP_002121923.1" /db_xref="GeneID:100185459" /translation="MENYRCAMLLSAVGDAMGYKNGEWEQNPSGCEIMKELDSFGGFGAISLEADTWPVSDDTIMHMATARALVEKANSKKDELFSEMASCYVDAIESASARRPDPSYLEGCASLRPGRTMGWHVPFNRHGTGFGAASKAMCIGLVYWKPTQQKELIRIALESGRMTHNHPLGFTGSVCTALFTSFILQSKPIVTWGRSILSSFDIMKAYCKKTIRSNQEYREHWCYFETKWEIYLKQRGILNEGEDVVKFPPKYDMETREKIYKSWSSEGRAGRRGHDAPMIAYDALMVAQQSSGNKWQELCYHAMIHGGESDSTGCIAGFWYGLMYGLEGIPLGHYDHIEFKDELEELAAKLYETSR" misc_feature...
AA_position 77
XM_002121887.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis uncharacterized protein C1orf189 homolog (LOC100177459), mRNA. (594 bp)
coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:100177459" CDS 85..447 /gene="LOC100177459" /codon_start=1 /product="uncharacterized protein C1orf189 homolog" /protein_id="XP_026691177.1" /db_xref="GeneID:100177459" /translation="MSMNMSLRFEVANRGGSLINSLKVEKERIMKDELMAERILQVTTEKNDNLKAGWAEGLEEASQTQRYRLNKEEIKHELSYANKAVVAVRRAALRELLEREHDMYEQELHKIGKAFYIKRT" misc_feature 208..441 /gene="LOC100177459" /note="Domain of unknown function (DUF4558); Region: DUF4558; pfam15104" /db_xref="CDD:434461" ORIGIN //...
AA_position 31
XM_026835376.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis 60S ribosomal protein L35 (LOC100179536), mRNA. (484 bp)
genomic feature by RNAseq alignments, including 228 samples with support for all annotated introns" /db_xref="GeneID:100179536" CDS 86..457 /gene="LOC100179536" /codon_start=1 /product="60S ribosomal protein L35" /protein_id="XP_002131705.1" /db_xref="GeneID:100179536" /translation="MARIKAKELRGKSKDELLKQLNDFKQELSTLRVAKVTGGAASKLSKICLVRKSIARVLTVINQTQKDNLRKLFKGKKHKPKDLRPKKTRALRRRLNKHEESLKSVKALKKARLYPQRQFAIKA" misc_feature 104..274 /gene="LOC100179536" /note="Ribosomal L29 protein; Region: Ribosomal_L29; pfam00831" /db_xref="CDD:425893" misc_feature order...
AA_position 14
XM_002131669.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis prefoldin subunit 6-like (LOC100179681), mRNA. (1002 bp)
including 225 samples with support for all annotated introns" /db_xref="GeneID:100179681" CDS 33..404 /gene="LOC100179681" /codon_start=1 /product="prefoldin subunit 6-like" /protein_id="XP_002128134.1" /db_xref="GeneID:100179681" /translation="MGAVDAQVRLELQKEFDEIQKVQKEIQKSAELQKKLDSQLNQNTVVKDELEFLEPESNVYKLTGPVLVKQDLGEAKGTVSKRIEYISAEIKRQETLVADLEKQLNKHKESVSKIQAKATAVAH" misc_feature 66..380 /gene="LOC100179681" /note="Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and...
AA_position 47
XM_002128098.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis Myc-induced nuclear antigen with a molecular mass of 53 kDa-like 1 (mina53-like1), transcript variant X2, mRNA. (1573 bp)
db_xref="GeneID:494417" /translation="MPARLKWTDEYMKENYGDLRVKLESKYEKDFKPEGDRGMGQDSMRRFLDTYIEHDKYMVSQLPDPLSEEVTVPQPILCGSFRERILEANIWMSSGNTKSLLHRDADNAFNCLLNGTKDWILIDPVHQDLLPVAVESGSPYGGYTLINVNKVDLIEFPEFKEVPWYYANVSAGDCLFLPKGHWHQVRSYGAKNLAVSILFSRLNDFNPKGCPKEGVPPSELLSEVPMVWTYDGFEAQTMGNADPFELKDELEMKCKHAEGKLTLEMFEEDMISGLDVEEEAYKGTLKVDADEYEIPDENIEIMKQRAKAIMDLIDPDNIGYYDCSQLEDMTVDTLKKISDIKDPDPANTDQYEFLHLHPNLVRKTILSSLELSKESFMEKYHSHEGSMAGAQWIFETLDSDNDGRCTVAEVKGNMEKVLERFQDSLLADVTAHQAKKINQNSKDEL" misc_feature 106..717 /gene="mina53-like1" /note="Cupin-like domain; Region: Cupin_8; pfam13621" /db_xref="CDD...
AA_position 247
XM_026837967.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis uncharacterized LOC100175690 (LOC100175690), mRNA. (858 bp)
CDS 80..583 /gene="LOC100175690" /codon_start=1 /product="uncharacterized protein LOC100175690" /protein_id="XP_002127930.1" /db_xref="GeneID:100175690" /translation="MFLKKYGLVVCCWLLVINVAADLNIPFGLKQSEYCKLCKVTCDGIGRFKREGNKVSNLDQVCSKKYLLLEGVEMTKARKVCEHILEEYDDEMESKVFTTSDIAFRSWLCNERSYACIGLRKDELDITAKKPIELKADELTEDELVDLLMKDNKGRVMSPRYNNKEEL" ORIGIN //...
AA_position 121
XM_002127894.4 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis Myc-induced nuclear antigen with a molecular mass of 53 kDa-like 1 (mina53-like1), transcript variant X1, mRNA. (1780 bp)
ESVPRGHNEWLGFHRPAEGHIDVLTEVPTPQKFWEDYCSLGKPVLLKGIALDMPARLKWTDEYMKENYGDLRVKLESKYEKDFKPEGDRGMGQDSMRRFLDTYIEHDKYMVSQLPDPLSEEVTVPQPILCGSFRERILEANIWMSSGNTKSLLHRDADNAFNCLLNGTKDWILIDPVHQDLLPVAVESGSPYGGYTLINVNKVDLIEFPEFKEVPWYYANVSAGDCLFLPKGHWHQVRSYGAKNLAVSILFSRLNDFNPKGCPKEGVPPSELLSEVPMVWTYDGFEAQTMGNADPFELKDELEMKCKHAEGKLTLEMFEEDMISGLDVEEEAYKGTLKVDADEYEIPDENIEIMKQRAKAIMDLIDPDNIGYYDCSQLEDMTVDTLKKISDIKDPDPANTDQYEFLHLHPNLVRKTILSSLELSKESFMEKYHSHEGSMAGAQWIFETLDSDNDGRCTVAEVKGNMEKVLERFQDSLLADVTAHQAKKINQNSKDEL" misc_feature 193..876 /gene="mina53-like1" /note="Cupin-like domain; Region: Cupin_8; pfam13621" /db_...
AA_position 318
XM_026837966.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis cytochrome P450 2L1-like (LOC113474702), mRNA. (534 bp)
using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:113474702" CDS 1..534 /gene="LOC113474702" /codon_start=1 /product="cytochrome P450 2L1-like" /protein_id="XP_026692574.1" /db_xref="GeneID:113474702" /translation="MYDWQIIATYYSGEELPRLDHKDELPLLQAFIQELYRCMALIPLGIQHQTTKNVDICGYCIPKDTVVFTNIHAVHHDPNIWKNPSEFNIYRHIDEEGKFIPSRKVIPFGIGCRSCLGEKLARIEIFLFLANIIKRFEVRPDPDSEPLLPIDDGITGFGFLPFLFKAVVLPRTNKGTQ" misc_feature <46..495 /gene="LOC113474702" /note="cytochrome P450 (CYP) superfamily; Region: cytochrome_P450; cl41757" /db_xref="CDD:425388"...
AA_position 22
XM_026836773.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis mesencephalic astrocyte-derived neurotrophic factor homolog (LOC100178512), mRNA. (1017 bp)
astrocyte-derived neurotrophic factor homolog" /protein_id="XP_002127331.1" /db_xref="GeneID:100178512" /translation="MANSFFNTELLFISFVAILFIILPVNSKDEAECEVCLKFLTKFQDTLSKEGISDLKSIDEKLREVCKKARGKENRFCYYIGGTEDAATGLLQEVTKPCSYHLPPQKICEKLKKKDAQICELRYEKQIDWKNVNLNKMRVKQLKKILMDWGEECKGCLEKQEFVDRVKELIPQYVKDEL" misc_feature 257..544 /gene="LOC100178512" /note="ARMET, N-terminal; Region: ARMET_N; pfam20145" /db_xref="CDD:437977" misc_feature 554..682 /gene="LOC100178512" /note="Degradation arginine-rich protein for mis-folding; Region: Armet; pfam10208" /db_xref="CDD:431135" ORIGIN //...
AA_position 175
XM_002127295.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis histone H1-delta-like (LOC104266556), mRNA. (893 bp)
by RNAseq alignments" /db_xref="GeneID:104266556" CDS 173..730 /gene="LOC104266556" /codon_start=1 /product="histone H1-delta-like" /protein_id="XP_009861343.1" /db_xref="GeneID:104266556" /translation="MKEKIVMSDSTLPTVPVPSSAVAKKKKSATKTTTSATKVHPKYSDMIVSAVKTLRRPKGSSRQAITKYVQSNYDVGTGAAKHISRNLKSMVDKDELVLASGVGAAGRFRINKSALAGKARTTKQRKSPKKKKKPITKKNKRKTTAKKPRSPVKKRSAKKSPKKKLVKKNKKTVKKAVKKPLKKRK" misc_feature 290..496 /gene="LOC104266556" /note="linker histone H1 and H5 family; Region: Linker_histone; pfam00538" /db_xref="CDD:425740" misc_feature order(302..304,338..340,428..430,470..472) /gene="...
AA_position 93
XM_009863041.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis ADP-ribosylation factor-like protein 6 (LOC100182512), mRNA. (1322 bp)
CDS: deleted 1 base in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: ADP-ribosylation factor-like protein 6" /protein_id="XP_009861298.1" /db_xref="GeneID:100182512" /translation="MGIMNKLFGWLKGKKKEANVLCVGLDNSGKTTIINYLKPNDAQQVDIVPTVGFNVEKVTMTNLSFTVFDMSGQGRYRVLWSHYYKETQGVIFVVDSADKLRMAVAKDELDQLLKHQTIMNKRIPILFFANKMDVQNSLSAVKCSQLLGLENIKEKPWHICASNAKTGEGLSDGMHWLSDQLQTVK" misc_feature 89..574 /gene="LOC100182512" /note="Arf-like 6 (Arl6) GTPase; Region: Arl6; cd04157" /db_xref="CDD:206722" misc_feature 104..127 /gene="LOC100182512" /note="G1 box; other site" /db_xref="CDD:206722" misc_feature...
AA_position 106
XM_009862996.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis protein dj-1beta (LOC100178410), mRNA. (741 bp)
GeneID:100178410" CDS 73..633 /gene="LOC100178410" /codon_start=1 /product="protein dj-1beta" /protein_id="XP_002131557.1" /db_xref="GeneID:100178410" /translation="MSPTALVIIADGSEEIEAVVVIDVLRRAGVYVTVAGLTDDVTVTCSRNVKIQPDVNIATAAKNVPYDVIILPGGLKGANAMSKATSVKDLLTDQDKSCRLIGAICAAPMVLKSHDIGAGRNVTSYPAFKDELSEMFVYNDYDVVVDGHVVTSRGPGTAMKFALKVVRLLCGDDVTNTTASALLFKL" misc_feature 85..579 /gene="LOC100178410" /note="Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1; Region: GATase1_DJ-1; cd03135" /db_xref="CDD:153229" misc_feature 385..387 /gene="LOC100178410" /note="conserved cys...
AA_position 129
XM_002131521.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis calcium and integrin-binding protein 1-like (LOC100181080), mRNA. (1378 bp)
by RNAseq alignments, including 196 samples with support for all annotated introns" /db_xref="GeneID:100181080" CDS 123..686 /gene="LOC100181080" /codon_start=1 /product="calcium and integrin-binding protein 1-like" /protein_id="XP_002128104.1" /db_xref="GeneID:100181080" /translation="MGSANSHFTKDELQEYSELTFFTKQEVLHVFEKFVELDQDNVNNDKLCRVSMEKVCQMPELKVNPFNDRICRIFSTSQNFDGSLSFEDFLDMMSVFSDQAPKGLKVEYAFKVYDFNEDDLLDAEDIEMVVSRLTGYAGSLKDDEMQQLLKNIMQEADLDNDDQLSYAEFEHVISKSPDFLNSFRIRL" misc_feature 132..656 /gene="LOC100181080" /note="Ca2+-binding protein, EF-hand superfamily...
AA_position 10
XM_002128068.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis 60S ribosomal protein L9 (LOC100177652), transcript variant X2, mRNA. (685 bp)
CDS 63..638 /gene="LOC100177652" /codon_start=1 /product="60S ribosomal protein L9" /protein_id="XP_004226861.1" /db_xref="GeneID:100177652" /translation="MKIIHSSQVVTLPDEVKVSVKGRVVTVRGPRGVLKKNFNHLKVELTKVGTNSVKVDKWFGNRKDLACVRTICSHINNMATGVTKGYRYKMRSVYAHFPINCNITEEGKKIEIRNFLGEKFVRRVDMRAGVKVVSSAKQKDELILDGNDIELVSLSAALIQQSTTVKNKDIRKFLDGIYVSQKTTIVEDEAL" misc_feature 63..629 /gene="LOC100177652" /note="60S ribosomal protein L6; Provisional; Region: PTZ00027" /db_xref="CDD:240234" ORIGIN //...
AA_position 139
XM_004226813.4 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis 60S ribosomal protein L9 (LOC100177652), transcript variant X1, mRNA. (661 bp)
CDS 39..614 /gene="LOC100177652" /codon_start=1 /product="60S ribosomal protein L9" /protein_id="XP_026693473.1" /db_xref="GeneID:100177652" /translation="MKIIHSSQVVTLPDEVKVSVKGRVVTVRGPRGVLKKNFNHLKVELTKVGTNSVKVDKWFGNRKDLACVRTICSHINNMATGVTKGYRYKMRSVYAHFPINCNITEEGKKIEIRNFLGEKFVRRVDMRAGVKVVSSAKQKDELILDGNDIELVSLSAALIQQSTTVKNKDIRKFLDGIYVSQKTTIVEDEAL" misc_feature 39..605 /gene="LOC100177652" /note="60S ribosomal protein L6; Provisional; Region: PTZ00027" /db_xref="CDD:240234" ORIGIN //...
AA_position 139
XM_026837672.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis basic phospholipase A2 nigroxin A-like (LOC100175981), transcript variant X3, mRNA. (1711 bp)
with support for all annotated introns" /db_xref="GeneID:100175981" CDS 158..763 /gene="LOC100175981" /codon_start=1 /product="basic phospholipase A2 nigroxin A-like isoform X3" /protein_id="XP_026689604.1" /db_xref="GeneID:100175981" /translation="MSFLTPAFLCLVCSFVLTSAESRKVSLGIFPDVPGRNMDKMFSKDELEEMLETIEPAGSNELYDSIKYSTTATSLNLAKQIMCYQGKKWNLWNVLLVAAKYGKYGCWCGVGGKGTPVDGIDSCCKSHDLCFNAATKKWAPNYSSVQIYFHKYKMSCHQKSTACYGSGLSLALCECDKKISKCIHAAGNYCSGFAFGQTKNC" misc_feature 380..715 /gene="LOC100175981" /note="Phospholipase A2; Region: Phospholip_A2_1; pfam00068" /db_xref="CDD:425448" misc_feature order...
AA_position 44
XM_026833803.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis 40S ribosomal protein S5 (LOC100186730), transcript variant X2, mRNA. (781 bp)
ribosomal protein S5" /protein_id="XP_002129691.1" /db_xref="GeneID:100186730" /translation="MEEDYEADVIVAEAPEVKLFGRWTTSDVQINDISLTDYLPVKDKYSKYLPHSSGRYQIKRFRKAQCPIVERLVNSMMMHGRNTGKKLLTVRIIKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQSVDVSPLRRVNQAIWLLCTGAREASFRNIKTIAECLADELINAHKGSSNSYAIKKKDELERVAKSNR" misc_feature 180..740 /gene="LOC100186730" /note="Eukaryota homolog of Ribosomal Protein S7; Region: uS7_Eukaryote; cd14867" /db_xref="CDD:271246" misc_feature order(180..182,267..275,279..290,387..389,399..401) /gene="LOC100186730" /note="S9 interface [polypeptide binding]; other site" /db_xref="CDD...
AA_position 193
XM_002129655.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis 40S ribosomal protein S5 (LOC100186730), transcript variant X1, mRNA. (776 bp)
ribosomal protein S5" /protein_id="XP_004226822.1" /db_xref="GeneID:100186730" /translation="MEEDYEADVIVAEAPEVKLFGRWTTSDVQINDISLTDYLPVKDKYSKYLPHSSGRYQIKRFRKAQCPIVERLVNSMMMHGRNTGKKLLTVRIIKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQSVDVSPLRRVNQAIWLLCTGAREASFRNIKTIAECLADELINAHKGSSNSYAIKKKDELERVAKSNR" misc_feature 175..735 /gene="LOC100186730" /note="Eukaryota homolog of Ribosomal Protein S7; Region: uS7_Eukaryote; cd14867" /db_xref="CDD:271246" misc_feature order(175..177,262..270,274..285,382..384,394..396) /gene="LOC100186730" /note="S9 interface [polypeptide binding]; other site" /db_xref="CDD...
AA_position 193
XM_004226774.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis glutathione S-transferase kappa 1-like (LOC100186348), mRNA. (924 bp)
start=1 /product="glutathione S-transferase kappa 1-like" /protein_id="XP_002126524.1" /db_xref="GeneID:100186348" /translation="MAQPMRKILVEFFYDTVSPYSYIAFQVINRCNKSWTNMDLKLKPAFLPAVMQQTNNAPPAMVPARGRYMSHDLLRMADFYKVPFKMPRNISDVMMNKGTISAQRLLTVVATEAPQYLEGLSREIFMRVWVRDEDVTMVESLKDACRAVGMGHEVDQLVGKMAHTDVKDELRRVTQEAIDYGSFGMPTFVAHLTNEPTMLFGSDRLFLLAYYLKQSWPCDVTEAKL" misc_feature 83..691 /gene="LOC100186348" /note="Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388" /db_xref="CDD:444880" ORIGIN //...
AA_position 167
XM_002126488.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis uncharacterized LOC108949505 (LOC108949505), transcript variant X1, mRNA. (2665 bp)
samples with support for all annotated introns" /db_xref="GeneID:108949505" CDS 1456..2142 /gene="LOC108949505" /codon_start=1 /product="uncharacterized protein LOC108949505 isoform X1" /protein_id="XP_018667472.2" /db_xref="GeneID:108949505" /translation="MPSSRFLRLKQTISPRWNPIAEALNENFEKDELPNVYSRPATTNATLPIKRTSSRCTPSAQTLRCLQQKQQESRTKPDLNRSRHRNLRRSSSVPPPEKMSSRRGSRVLMPLATPITDFESFEESVTPTRAVTSNSTVECNAAISEKVQGFCNKVASNSDQPQWKKYDTKWSVVKNFVLSQKKANIGTPSPPAGQISVDTPPLSGDRKPSVWWPNTLETYSKPAQQVLN" ORIGIN //...
AA_position 30
XM_018811927.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis uncharacterized LOC100179680 (LOC100179680), mRNA. (710 bp)
annotated introns" /db_xref="GeneID:100179680" CDS 24..710 /gene="LOC100179680" /codon_start=1 /product="uncharacterized protein LOC100179680" /protein_id="XP_026693932.1" /db_xref="GeneID:100179680" /translation="MPPAQTDLPSHAFQDGTVIGVKELFQSYEDSLLPIDQQLLKYKKKDLHASHYHRTACRIFSNRKRIHRSHFVDDNPFAITSTKDELGSRTISYHTPNEEVVHVSSPDQVSTHKSWVEERRKLRHNLNNLGLTAEWLEKKPVRNSVESRVLAGLAGKVKRTPSPTFAPECPSDISTVLKTITKHIASIDKLPTIFPNCNRTKRISRLNCKEGLLKLQRVPRVVFWYLNH" ORIGIN //...
AA_position 83
XM_026838131.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis protein canopy 4-like (LOC100184874), mRNA. (1662 bp)
XP_002129613.1" /db_xref="GeneID:100184874" /translation="MIRFVILVVCVIACTLCRRVQADDYLLEEPTSCEVCKYFVNELQDRLDETGKSKEILRTGHGLDPKKRKKIAYKTSELRLVDAMEGICERILQYNVHKERKGSLRFAKGRSETMETLQGLVAKGVKVDLGIPYDLWDEPSVEVTLMKKQCERMLEEYEDTIEDWYFNKQSSKDLLSYLCKENVLNKTNQACLAEQWTGKEKKYDDTNDDAVVEAKKKRKGKKKKKKARKSESSDAKAANKDEL" misc_feature 206..652 /gene="LOC100184874" /note="TLR4 regulator and MIR-interacting MSAP; Region: DUF3456; pfam11938" /db_xref="CDD:432202" ORIGIN //...
AA_position 240
XM_002129577.4 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis G patch domain-containing protein 11-like (LOC100178370), mRNA. (1084 bp)
CDS 155..910 /gene="LOC100178370" /codon_start=1 /product="G patch domain-containing protein 11-like" /protein_id="XP_002129492.1" /db_xref="GeneID:100178370" /translation="MGDEDDYMSDIFTNNIQEPKVSLKPGVSNSRKRTLEKRRAHDVNKSKPKKVIELETREKGLATEIGQDNKGFKMMAMMGYKKGEGLGKGKTGRIEPVPISVKANRTGLGKDELEKQRKAARKKMETFMLQQRAKVEHNRREDFRFRMSEKFALQLLEKDLNKSQKACHTLDSAGDVTEPEMYFYWPEMCTSPEEEEEKEDQHSVNEKLVLITEYLRTKYFYCIWCATKYNDLNDIKSNCPGDTANSHDDFD" misc_feature 761..895 /gene="LOC100178370" /note="Domain of unknown function (DUF4187); Region: DUF4187; pfam13821" /db_xref="CDD:433502" ORIGIN //...
AA_position 110
XM_002129456.4 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis vacuolar protein sorting-associated protein 37B-like (LOC100179674), mRNA. (1574 bp)
samples with support for all annotated introns" /db_xref="GeneID:100179674" CDS 153..911 /gene="LOC100179674" /codon_start=1 /product="vacuolar protein sorting-associated protein 37B-like" /protein_id="XP_002126936.1" /db_xref="GeneID:100179674" /translation="MSQWSYNQYSHHGNRPAPNPKDEDDFSELLEDASKDELQMLIDNEDKILEIVMDDKKVKDMKMDNVMQQASNRSIADDNISKEPHLTQLRDALAEKYETLKQLNDTFLLNQAKLESLQKDTNLETTLAVLQTTCAQTEEESEELAEAFFAGNLSIGEFLTQFKAKRMLAHNRHIKTDKMKELVLEVQRQTSTPAVPPRNQPTNQTPAYPGSSRSASHHTPYSSGYGVPQQGKYPGTSFNQPTGQQYPGFNWK" misc_feature 243..677 /gene="LOC100179674" /note="Modifier of rudimentary (Mod(r))...
AA_position 35
XM_002126900.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis uncharacterized oxidoreductase TM_0325-like (LOC100181369), mRNA. (935 bp)
including 100 samples with support for all annotated introns" /db_xref="GeneID:100181369" CDS 91..852 /gene="LOC100181369" /codon_start=1 /product="uncharacterized protein LOC100181369" /protein_id="XP_002127389.1" /db_xref="GeneID:100181369" /translation="MAAGKRVVLVTGSSRGIGAETAKGFAKEGASLCITGLPSQKDELAEVAKVCKENGSPHVLEVAADLRKQEDMDLLMNETIKTFGQLDVLVNNAGIVLFKDIEEYTSEDFDKVFSINVKAPIYLTKIARPYLSKTKGNIVNLCSVARETYARNFLVYGMAKISIAHLTKTIAADFTKYGIRCNAVCPGVVETDIYEGTIPTDRMRKIIGYNITKLRNRLTTKSDVSDLIRFLASDKATMITGELITIDGGRSLL" misc_feature 106..849 /gene="LOC100181369" /note="Rossmann-fold NAD(P)(+)-binding...
AA_position 41
XM_002127353.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis Smad4 protein (smad4), mRNA. (3171 bp)
note="Smad4 protein" /db_xref="GeneID:778905" misc_feature 25..27 /gene="smad4" /note="upstream in-frame stop codon" CDS 58..1641 /gene="smad4" /codon_start=1 /product="Smad4 protein" /protein_id="NP_001071944.1" /db_xref="GeneID:778905" /translation="MQNPTTSNDACLSIVHSLMCHRQGGESESFAKRAIESLVKKLKEKKDELESLITAITTSGAHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARLWRWPDLHKNELKHLKVCKFAFDLKCDSVCINPYHYDRVVSPGIDLSGLTLQHTPAAAPLVSNDYQDLKITDVQGNWMNQGKAEAMPLGPVQHQASEEYTSTSKAGTSNGISNGPVSGTMQYTPGASSFSTPSSSAPVNPNQAIGSASQQLIQYSQRNQHMSWQAGSTAKYTPEMSTPMTAPYYSPNDVPYLPVSTHPGPEFWCSITAYEMDVQVGETFKVPSSCPAVTVDGYVDPSGGNRFCLGQLSNVHRTEAS...
AA_position 46
NM_001078476.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis enkurin-like (LOC100180681), mRNA. (1067 bp)
ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:100180681" CDS 206..973 /gene="LOC100180681" /codon_start=1 /product="enkurin-like" /protein_id="XP_026692710.1" /db_xref="GeneID:100180681" /translation="MNGPVESIYNLIPREVEKPPNPPRYNSKFKSTVKDELKHNRSPNKTMGPAKVAVPTPTSFLKKRSKEPVLPEKTVFEYSGEVSRRPPVPRHDDKPLLGIRTNKNFINTNAVENIMSVTKKPLPKYVDTRCGDNNLLEPSGLVPKYTNKPDYGQMPEYLKKRNAEVKRAQEEYDQYIRDRMKQGAMQQLSDAERDDIINGLKKNWEELHHQYQGLSVVTDTAPKKNRKERMEAEMKQLERDIELVEKHRVIYIAHN" misc_feature 659..943 /gene="LOC100180681" /note="Calmodulin-binding; Region:...
AA_position 34
XM_026836909.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis nucleolin like protein CiRGG1 (cirgg1), mRNA. (2020 bp)
KVAAEPEATNEENELLKQEVENEENDEKVVKTEDSDDEQEESADESSDDDDSEEEEKVKPKVAKKESKSKAKKVVKESDEESDDDDDDSEEEEDDEKEDESDEESEDEDEDDDDDDDDEENEEEVKLVKRKATETEEVATKKVKLDPSEVATLLFTELPEGLNDAVFNKFLKSKEIKCVACRANYGRQKAYVDVRAEDKDAALQLHQVEWKGQEIQVTEAQSKAQDRKGDFASNRNDKDERTLFVKNLPYSADENAIAELFDGVKEVRLLTDRESGRPKGMAFIEFDSTAEKETAFGLKDELEMDGRSLYLDNVTRGRGNRGGRGGFGRGGGGFGAGRGRGGRGPSAPSKTLFVKGITEDMTRDTLYETFSGATDIRIPQDRDTGKNKFFAYVEYQSESSATEVYKSSKGGMHVDGSRLTIDYAAERSNDGGGRGGGRGGRGGGFRGGRGGRGGRGGGRGGHSAAKHKGSIQSFEGKRTKFEDSD" misc_feature 880..1104 /gene="cirgg1" /gene_synonym="NCL" /note="RNA recognition motif (RRM) superfamily; Region...
AA_position 337
Synonym: NCL
NM_001032790.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis folate receptor gamma-like (LOC100183675), mRNA. (916 bp)
gene="LOC100183675" /codon_start=1 /product="folate receptor gamma-like" /protein_id="XP_002126262.1" /db_xref="GeneID:100183675" /translation="MKGFSLYLVLVVHVLFHCIFSVHGGEEILSVCLDGKHHKESPGPEAELFDTCSPWKTRSCCTNETAFLTHQDGVNGAYNFNYNHCGIMSDKCRRHFNEDSCFYECSPNMGPWIVDVESSYRNQKFEDVPLCRSECVDWWADCKDELTCKNNWSVGWNWTSGVNECPSGAECKKFSEYFTGAVDLCENIYPRDFKVPSNDSAPCMVMWFEGENPNDEVSRYYAKEKGLCCGSNKLNYVSYIFIIILATFSKFLTEIY" misc_feature 163..681 /gene="LOC100183675" /note="Folate receptor family; Region: Folate_rec; pfam03024" /db_xref="CDD:397250" ORIGIN //...
AA_position 143
XM_002126226.4 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis uncharacterized oxidoreductase TM_0325-like (LOC100186091), mRNA. (1104 bp)
including 9 samples with support for all annotated introns" /db_xref="GeneID:100186091" CDS 288..1061 /gene="LOC100186091" /codon_start=1 /product="uncharacterized protein LOC100186091" /protein_id="XP_018668626.1" /db_xref="GeneID:100186091" /translation="MAATKRVVLITGSATGIGAETAKGFAKEGASLCITGLPSQKDELAEVAKVCKENGSPHVLEVAADLRKQEDMYLLMNETIKTFGQLDVLVNNAGITVNGDLDQYTSEDFDKIFSVNVKAPTYLTKLAKPHLSKTKGNIVNMCSVVRECHIKNCLLYGMAKASLAYLTKSTAADFAENGIRCNAVSPGCIYGTDILKGILSDEFKQQYFDSCITKLRGRLATKSDVSDLIRFLASDKATMITGEIITIDGGKVLSLKS" misc_feature 303..1046 /gene="LOC100186091" /note="Rossmann-fold NAD(P)(+)-binding...
AA_position 41
XM_018813081.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis uncharacterized oxidoreductase TM_0325-like (LOC100179031), mRNA. (992 bp)
including 4 samples with support for all annotated introns" /db_xref="GeneID:100179031" CDS 176..949 /gene="LOC100179031" /codon_start=1 /product="uncharacterized protein LOC100179031" /protein_id="XP_002127522.1" /db_xref="GeneID:100179031" /translation="MDATKRVVLITGSATGIGAGTAKGFAKEGASLCITGLPSQKDELAEVAKVCKENGSPHVLEVAADLRKQEDMDLLMNETIKTFGQLDVLVNNAGIQVYGDIEQYTSEEFDNVFSVNVKAPIYLTKLAKPHLSKTKGNIVNLCSVVRNWYLPKFIVYGMSKAAIEYLTKTTAADFAEIGVRCNAACPGMVLETDILVNVLPEEVQQQFREDCSTKLRGRTTTKSEVSDLIGFLASDKATMITGELITIDGGKMLSLTA" misc_feature 191..934 /gene="LOC100179031" /note="Rossmann-fold NAD(P)(+)-binding...
AA_position 41
XM_002127486.4 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis uncharacterized oxidoreductase TM_0325-like (LOC100175900), mRNA. (878 bp)
including 15 samples with support for all annotated introns" /db_xref="GeneID:100175900" CDS 56..829 /gene="LOC100175900" /codon_start=1 /product="uncharacterized protein LOC100175900" /protein_id="XP_002127470.1" /db_xref="GeneID:100175900" /translation="MDATKRVVLITGSATGIGAGTAKGFAKEGASLCITGLPSQKDELAEVAKVCKENGSPHVLEVAADLRKQEDMDLLMNETIKTFGQLDVLINNAGIALYGDIEQYTSEEFDNVFSINVKAMMYLTKLAKPYLSRTKGNVVNLCSVVRNWYLPKFIVYGMSKAAIEYLTKTTAADFAEIGVRCNAACPGMVLETNLMNSVVPKEVQQHFREGCSTKLRGRTTTKSEVSDLIRFLASDKATMITGELITIDGGKMLSLTA" misc_feature 71..814 /gene="LOC100175900" /note="Rossmann-fold NAD(P)(+)-binding...
AA_position 41
XM_002127434.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis uncharacterized oxidoreductase TM_0325-like (LOC100183731), mRNA. (908 bp)
including 22 samples with support for all annotated introns" /db_xref="GeneID:100183731" CDS 96..869 /gene="LOC100183731" /codon_start=1 /product="uncharacterized protein LOC100183731" /protein_id="XP_002127412.1" /db_xref="GeneID:100183731" /translation="MAAGKRVVLVTGSSRGIGAETAKGFAKEGASLCITGLPSQKDELAEVAKVCKENGSPHVLEVAADLRKQEDMDLLMNETIKTFGQLDVLVNNAGIFSFCDLEMYTSEDFDKTFSINVKAPIYLTKLAKPHLSKTKGNIVNMCSFAKEWYLKTCLLYGMSKASIAYLTKTTAADFAENGIRCNAVSPGAVADTDILEGVATEITKQELLEFNKSKLNGRITTKSEVSDLIRFLASDKATMITGELITIDGGKMLSLTA" misc_feature 111..854 /gene="LOC100183731" /note="Rossmann-fold NAD(P)(+)-binding...
AA_position 41
XM_002127376.4 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis uncharacterized oxidoreductase TM_0325-like (LOC100180582), mRNA. (1216 bp)
including 8 samples with support for all annotated introns" /db_xref="GeneID:100180582" CDS 148..939 /gene="LOC100180582" /codon_start=1 /product="uncharacterized protein LOC100180582" /protein_id="XP_002124589.1" /db_xref="GeneID:100180582" /translation="MSPTKRVVLITGSSRGIGAETAKGFAKEGASLCITGLPSQKDELAEVAKACKENGSPHVLEVAADLTKQEDMDLLMNETIKTFGQLDVLVNNAGIFMAADLEGYTSEDFDKIFSINVKAPIYLTKLAKPHLSKTKGNIVNMCSIARKNYTPNILLYGMTKASVAYLTKTTAADFAANGIRCNAVSPSGMDTKIFDNVFGKEHITAFLESLTTKLRDRLVEISEVSDLIRFLASDKAIMITGEIITIDGGLMLSKIAGLKTGHQ" misc_feature 163..894 /gene="LOC100180582" /note="Rossmann-fold NAD(P)(+)-...
AA_position 41
XM_002124553.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis phytanoyl-CoA dioxygenase domain-containing protein 1-like (LOC100176685), mRNA. (1348 bp)
domain-containing protein 1-like" /protein_id="XP_002122239.1" /db_xref="GeneID:100176685" /translation="MSQESSTWLQTQDFLEWKDKFDRDGYLVVKDILSPEEIKAYQRIFEELSTGSQTTTHRHDLGSHTTRKVKEHENISQTMWPSLFIPNLTQGILHTRALEVARSVLGSDMTFDFDMLISKAPHTDTETPMHQDESYWPDMPDKRAVTIWVALDNATVDNGCMWFVPGSHKLPLRPFKCAKEGHHVIICEGDKDELHAAPITAGSCTLHHGRTVHYTRGNSTDFKRRAFIMNFRPAEMVQWERNHDFDHGKSKGVQGDEHFAKETS" misc_feature 207..824 /gene="LOC100176685" /note="Phytanoyl-CoA dioxygenase (PhyH); Region: PhyH; pfam05721" /db_xref="CDD:399029" ORIGIN //...
AA_position 191
XM_002122203.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis glutamate receptor-interacting protein 1-like (LOC108949604), mRNA. (955 bp)
genomic feature by RNAseq alignments" /db_xref="GeneID:108949604" CDS 110..955 /gene="LOC108949604" /codon_start=1 /product="glutamate receptor-interacting protein 1-like" /protein_id="XP_026690922.1" /db_xref="GeneID:108949604" /translation="MGSNQSKSNSRKSHSDLYYHHGKLTLKERLSVLKTGSLKRNHQLRKDELTESDLAIYATKKWNSETTLDARTGGNQGPITEEDLQVVPARVEEIPEDERGEATVNLVKVDGVPLGLTVSGGADKDGRPRVSNLRSTGIAARSDQLQVGDIITSVNGIRSTKLKHGEIISLLKNISEKVCLEIEYLLPPTTVQTSTIIQKTTEVFLQKEHGSFGFVLRGGNHGQHCRSRPLVVTHIRPDSPAAREGTLKTGDRIISIGSTPLIGGTLQEVITLEKAKYLWLF" misc_feature 416..658 /gene="LOC108949604" /note="PDZ domain found in a...
AA_position 46
XM_026835121.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis ribonuclease H1-like (LOC100175037), transcript variant X4, mRNA. (1460 bp)
for all annotated introns" /db_xref="GeneID:100175037" CDS 69..914 /gene="LOC100175037" /codon_start=1 /product="ribonuclease H1-like isoform X2" /protein_id="XP_009860544.1" /db_xref="GeneID:100175037" /translation="MLRCCIRTAIMKSFYAVHIGKSPGVYDTWPECLAQVSKFKGAKYKKFSNKDEASYFAHTGTELSKDKSDILDIFKDELADNSAKESKPNNIPQSSIVSRKRKVKPDSNSRFGKVQKTNDQPTNDSSDGSCPVVYTDGACSKNGRKGSRAGYGVWWGDDHKLNFSARLPGIPTNQRAEIAAVNKAIKQAIDVGHKQLLIRTDSKFVIDCITKWVQGWIRKGWVKADGKPVIHKVEFQEMLKNMKKINVKFEHVFGHRGNYGNEMADKLAVQGATMPYLLNIG" misc_feature 108..227 /gene="LOC100175037" /note="Caulimovirus viroplasmin; Region: Cauli_VI;...
AA_position 75
XM_009862242.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis ribonuclease H1-like (LOC100175037), transcript variant X3, mRNA. (1462 bp)
for all annotated introns" /db_xref="GeneID:100175037" CDS 68..916 /gene="LOC100175037" /codon_start=1 /product="ribonuclease H1-like isoform X1" /protein_id="XP_002128178.1" /db_xref="GeneID:100175037" /translation="MLRCCIRTAIMKSFYAVHIGKSPGVYDTWPECLAQVSKFKGAKYKKFSNKDEASYFAHTGTELSKDKSDILDIFKDELADNSAKESKPNNIPQSSIVSRKRKVKPDSNSRFGKVQKTNDQPTNADSSDGSCPVVYTDGACSKNGRKGSRAGYGVWWGDDHKLNFSARLPGIPTNQRAEIAAVNKAIKQAIDVGHKQLLIRTDSKFVIDCITKWVQGWIRKGWVKADGKPVIHKVEFQEMLKNMKKINVKFEHVFGHRGNYGNEMADKLAVQGATMPYLLNIG" misc_feature 107..226 /gene="LOC100175037" /note="Caulimovirus viroplasmin; Region: Cauli_VI;...
AA_position 75
XM_002128142.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis E2F-associated phosphoprotein (LOC100187353), mRNA. (1082 bp)
relative to its source genomic sequence to represent the inferred CDS: added 106 bases not found in genome assembly" /codon_start=1 /product="E2F-associated phosphoprotein" /protein_id="XP_002123574.3" /db_xref="GeneID:100187353" /translation="MDSSDDETGFPLDDQVDKFLHGTPQQQTRALQRITGEDVSSSEDEFERTMKDELDEKMKTLEESWIDDYDLPADFPQSTKDAASCSTSKQDVKQTNYYDNVYFDSDEETAESERGKEKKKVVSNADLFYDPQADDDDQIWINKQKERGKIQKSKSESSRKPNQKESPQLSCPACMATVCLDCQRHDTYQNQYRAMFVLNCTVHKDEVLHYKGPKKKVFKRHKRKHDGSSSASDVGYVRSTDAETNQQSTNDSYHPVKCETCKTEIAVYDKDDVFHFFNVIAG" misc_feature 524..982 /gene="LOC100187353" /note="E2F-associated...
AA_position 51
XM_002123538.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis uncharacterized LOC100180312 (LOC100180312), mRNA. (2745 bp)
codon_start=1 /product="uncharacterized protein LOC100180312" /protein_id="XP_002120632.1" /db_xref="GeneID:100180312" /translation="MNSNYHSGYKDKPAHHVETSNQPSNIDVGALDYVNTQDLINQRDEALRKEEALRDRLKLQEAISAKQLNELRIQTRKLTTENQRFYKSSIISGTGGKGDRKRDVKVKDTKKLLKTIDQLQNENSTLKKKLEEMANFIQVASDIKLHSVSECKKKDELIFRLRAEKEATRHVIEEEVERRSKVENELYSFQNYLVYSSAKSREQLRHKAVQTMTSIPVRTAGSVRTGIVRSRLVRRTSSDIFHKPPIIKRREITCLSYTAEVNKSALHRLKVVENKHKVQSDGMRKKFHDVIGRA" ORIGIN //...
AA_position 154
XM_002120596.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
Ciona intestinalis aldo-keto reductase 1a (akr1a), mRNA. (1914 bp)
YETVKTALKLGYRMLDTAQIYTGEDKINNFKVSSEEEIGRAIADSDVPRSELFIVTKLAPESMEKENAIAKVEESLKKLRTDYIDLLLIHDFYMSTACGPDDTDLPECKNNPFLAWKTMEEMQAKGLVRSIGVSNIYIEDLQYLVKMAKTPISAVQNWFDPLHQEREIRALCAKNNIRFMGYSALGFTWIDKEQGLGRDVNPVLTNQNIVAIGNNHDLPTTLVVLRWAMEMNVTVMPCTTNVDHLEQNLNSRLFPLDNKSFPLIDQLDNLLGDPFQDEELPEEEPQKEEKPETAEMPSKDEL" sig_peptide 20..79 /gene="akr1a" /gene_synonym="Ci-AKR1a" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 821..1660 /gene="akr1a" /gene_synonym="Ci-AKR1a" /note="AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins; Region: AKR_AKR1-5-like; cd19071" /db_...
AA_position 581
Synonym: Ci-AKR1a
NM_001032661.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis 39S ribosomal protein L46, mitochondrial (LOC100182692), mRNA. (1591 bp)
translation="MNVSKCSSVLHGRFYPCFFNSIKQTKIPKRALTTQPNRSCDLDVETLSANRDPSPWKICAAVCLIRLPILTTELEEIEKKYAELSDLNEYERSVLSDWEVEKNRQANLIRDIESGEKNPEDMDFKVANQDIEEMNELEAQQFYEENETITIEDSDRTNINRQPNETLVMVTQQKLGKDNVWMLPVEPWSKEETLRECAERALISHCGTDVGAAFISNGPSGFYKYKFPKDARENSLVGAKLFIYNAYLPRVFIKDSKFTFPTKLCEDKVLQHAWLTKDELKSFTKPKFTNVIKKILL" misc_feature 431..>742 /gene="LOC100182692" /note="39S mitochondrial ribosomal protein L46; Region: MRP-L46; pfam11788" /db_xref="CDD:432074" misc_feature 728..1147 /gene="LOC100182692" /note="Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it...
AA_position 277
XM_009860079.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis 3-keto-steroid reductase-like (LOC100180521), mRNA. (2219 bp)
samples with support for all annotated introns" /db_xref="GeneID:100180521" CDS 922..1926 /gene="LOC100180521" /codon_start=1 /product="3-keto-steroid reductase-like" /protein_id="XP_002130850.1" /db_xref="GeneID:100180521" /translation="METKPEKFILVTGATSGIGLAFVKRLSMEFKRIYQLHICIACRNMTKGNVVKDELEFRHKGVTVDLVKMDVSNVQSVKCAAEQIRHLYTRLDYVYLNAGILPVSKFHVRYALNTMFSKDVLQMFKTGLGMFTTTDETTKEGVKSIFATNVLGHFVLVNELIPVLTSQSEDHHGQVIWTTSSNASKKSFKLNDVTCQQGSQPYSSSKYAMEGVSIEMNKRLNSLGIYSHVSDPGTVKTNITKGVVAEWLWYFLIPFMWMLRLFLPNFTIYPYNACHSMVWLFQQDPEKLEDRCRYCSYTNVFNTNYIHTETLAPSRFESELIYDQVKKVSKRVCS" misc_feature 940..1785 /...
AA_position 52
XM_002130814.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis E3 ubiquitin-protein ligase RNF34-like (LOC100178192), mRNA. (2204 bp)
MPCACCSAQFSILKWKSRCSNCFQLFCSDCSIGRECRPCCYVNRCKSSKTSLMQIKVKDLQGYLKNFKIEHRTCKEKHELVKLIQNQFGITSSENIQPPSSYTTHDNRANEDQRRDDNSDQNQSENSSTDDPAVHLPTPPTYQRTQESFPTAEQFNVSSSGNDSSIATPIVIEDTEESTSTHNNANTVENNEVTEETSTSYAFSSPAVERTAKKTKIGLSEIKSVQEIESYSIKQLKTLLQENLVNYKGVLERTELVNRVKNLYEDHVSNESNISDDITEENSSSYVTNKDELFCKICWERPRDCVLLECAHMSTCITCGKQLRECPICRQHIVRAVRVFKS" misc_feature 334..450 /gene="LOC100178192" /note="FYVE domain like superfamily; Region: FYVE_like_SF; cl28890" /db_xref="CDD:333710" misc_feature order(376..393,406..408,433..435) /gene="LOC100178192" /note="phosphatidylinositol 3-phosphate binding site...
AA_position 290
XM_002121871.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis nuclear factor interleukin-3-regulated protein-like (LOC104265765), transcript variant X2, mRNA. (1117 bp)
protein-like isoform X2" /protein_id="XP_026690415.1" /db_xref="GeneID:104265765" /translation="MNNNNLNNDDFPFVNNNRRSVGPPKLIPIGYLPNPTSFGSFPRFPNPLATNERQNHRQMQLPVRASTGSRRSRHFVPNECKDEYYWRKRKKNNEAARKSREKRKTIDSVLEDKVLFLSQENLCLRNELYALKVKYGEIDGTEAGANNLLSDKDHTDDLSMYSMLPSPSNSLSEVECKSSSNMCQRESTTPPVIYPEVPNEKDELAMHNLHKISELHTKTADGKFKDDDFEPTREVICQTREPHSILSNLAAGKFVLTSIDLPEKSPTQGVDLTIKSAARDSQAIAQNSVPGSDCVTYEAASVLVDLLKMSQNPQTPEKKLEDESGSKYNSSLPHKLRFKGRNLDV" misc_feature 262..429 /gene="LOC104265765" /note="Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain;...
AA_position 201
XM_026834614.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC
PREDICTED: Ciona intestinalis nuclear factor interleukin-3-regulated protein-like (LOC104265765), transcript variant X1, mRNA. (1117 bp)
protein-like isoform X1" /protein_id="XP_009858775.1" /db_xref="GeneID:104265765" /translation="MNNNNLNNDDFPFVNNNRRSVGPPKLIPIGYLPNPTSFGSFPRFPNPLATNERQNHRQMQLPVRASTGSRRSRHFVPNECKDEYYWRKRKKNNEAARKSREKRKTIDSVLEDKVLFLSQENLCLRNELYALKVKYGEIDGTEAGANNLLSDKDHTDDLSMYSMLPSPSNSLSEVECKSSSNMCQRESTTPPVIYPEGPNEKDELAMHNLHKISELHTKTADGKFKDDDFEPTREVICQTREPHSILSNLAAGKFVLTSIDLPEKSPTQGVDLTIKSAARDSQAIAQNSVPGSDCVTYEAASVLVDLLKMSQNPQTPEKKLEDESGSKYNSSLPHKLRFKGRNLDV" misc_feature 262..429 /gene="LOC104265765" /note="Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain;...
AA_position 201
XM_009860473.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

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Redirect URI : http://ggrna.dbcls.jp/ci/aa%3aKDEL
lang : en | div : | spe : ci | query_string : aa:KDEL | format : html | download : 

0.000 | 0.000 | search_start;
0.195 | 0.195 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(aa:KDEL)?source=Ciona intestinalis (vase tunicate)?to=0&format=json
0.379 | 0.184 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(aa:KDEL)?source=Ciona intestinalis (vase tunicate)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.385 | 0.005 | cgi_end;

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]