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2024-03-28 22:51:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_026840837            7905 bp    mRNA    linear   INV 22-OCT-2018
DEFINITION  PREDICTED: Ciona intestinalis rho guanine nucleotide exchange
            factor 17-like (LOC100185174), transcript variant X2, mRNA.
ACCESSION   XM_026840837
VERSION     XM_026840837.1
DBLINK      BioProject: PRJNA187185
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_020167.2) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Ciona intestinalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7905
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="2"
     gene            1..7905
                     /gene="LOC100185174"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 27 ESTs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     16 samples with support for all annotated introns"
                     /db_xref="GeneID:100185174"
     CDS             118..7344
                     /gene="LOC100185174"
                     /codon_start=1
                     /product="rho guanine nucleotide exchange factor 17-like
                     isoform X2"
                     /protein_id="XP_026696638.1"
                     /db_xref="GeneID:100185174"
                     /translation="
MPDKNENAKDENRSIIDNNRRLLARDMLSSVLPRSRGTSPARHTRSRRTGTDTTDGLKPTKVTGGGSPASVKKRLGARSESPIISEGGEVTIPGEEEFNIMFDTVRKLSRDSETMSINNYSKLVDAFSKTTGDAKRSEIKLKQTLNNIGGNHFATCEGKRANYNHTAESDRSRIVPDYITRVNESSKPNFASAKPSVKSAVQQKQEPDRAMAKRRRERSGRGARRQHLRLENGTSTADDSAVGQANQANAIKYLPTYIQPVVETPRQQHRTADYDIFQHKKHTYTTGSTANGRSSRKSFVDRQVARIGDNRLSSSSSSDNSSVEDSSTRSSTRPAKSVQDISDADSESQPGRRTRRNRLRNRANQQRPIHTPDYVIATPPRKVSDHGVGTSDISRQLANKVSSVNDRSPKTSEASDYMGKQYQSREKRPSVDSVGKISTSPRNFQPTTVQNLVEGRIDHSTPNEATVVPKVQPKLGRETGRRESREKLIISGKQISAPLEEVQKEGSPTQINSTNQSPNNPVSDVAVQSNKVTSSPSIDEHDTAAGRKTAIEKNGVQLPQYKTKPVGNLRELFNSQEQLKTKFGHAFNSSKPSEQVNSKTDQAKRDRRTSLNEADADADNEQVVHSQPMLKARKVSEDYWPRDEVTEKLLQSRSTHSSISSSKPSLMPVSEAPTSTEQSNEVHAMKESLGHKQSLVTVMHLPKETNLSDPQVLSSEPMFVKGSPCDKLKHNQDDSVLHVADVINAKQTTERNAAAQTPRTLVRGHSNSSEAQRNSSSSSNACHKHTRSQSTDSTASNPEAYTTLTKQVVSHKPPPTPVWSFEETDRKLRQYDKTLPSDASLNNTTVCNGTTTDSWASSNDAAVLQSELNDLTPTLRDISINGSPLYVAPKFASYSANKPASVQVSPHVRTTQAPVVCDDMARHAVVTSSSASGVSNNSSTISTSSRKSSVVSLSTALRKGSANSACSPPPPSTVEIDEGCYTEEDVTAKGSPMSAPFAHPGFTLGEDEILDKSEFQNGPSNNNRRRRKYSAAGHSGSDVSNESVRSLSDPIPVRGKDLVGTEDGAVDGSYIVSLNQHDTAETVPDRNSVSDLSLYSENTSLPDDASDKLVNEPEKRKEQEDHTLAVQGTKTGGKTIKKKSFSDPNANAVLTAGLIGSMNAEMESPALYNSSSEPALSEQTDELGELNQFHIYQSTKHSGNHTKDNVLPSSGIGDMTHSIEEMSKLLLAEHTVMSPRSARRNMTLKSRKRAQIEQMKSKETVPLNNFIQNELHIQIAASVDPVVEDIFEKEEEQFQQMYESMTGAIPEKMPVVHTRSCSEPVPMDKLENRLVQKASERGRRAGIVQAPSLNDVMGDNRIPPPTESPLKHTKQLSNSVDRIHSATLPRAAGSRGLGFQVDKLDMRKHVVRNLLETEESYVNSLRILYETYFKPLKQPENHVVCEPRLVDEMFFQIPQILQHHEKFFENVEECFENWDPESVKIGDVFIQSFNKDMLLEAYTSYIKNFLNAREAVTIATQAKTAFKLFLEQCQRENRDKQGLSDLMIKPVQRIPRYELIIKDLLKHTPEDHADRTSLLIAQREIHALSVQMNKGEKEAEAAERHAKLLQDIEQIIEGCMEISGITKRRFLRQDICIELKSGNKKDRSLWLFNDLLMCTTSKKGRTGSLRRSSMNLWSMTTDRIMVDFTSKYKFLWKFPLEDVELLKGSTGPNRQVTEKQLQQLRCDHDLLIQMEKLASDLSTSHLLLDEAVKDLLSQTSQKIIEKQQMTMHGVGLPGRLEIGISTPDGMKMFQFEFQSEDNKTQFEVLFWNAKKNFNPQKSRWDPTFMKAIPISKTRNGMQFSCAAPNVDTSPGTREVWVCNTDGYVGQICFLSIEPETLPTKSITVCNSKICCIAQVPTWDRKLVPTNTFVNDISKAPLIHLPHGRRRSSTHSNPAHKIIAWDDTDDSDEDNTSPFSTNSNYSSYSMSPYSTNNSMSNFDEEIILPIMSPLLPSAFLPKGFGFGEPPAYVPSDEESDISLSTNDGSLLGDHGSRAPTNSLMHALLGSGAFKKDSDGSTLHGSLEDLLSDSTSSMTKHPPLAGKNSMGSKMLSNHGSMWLGTEDGKIKVYSTAEAIKGNKQCVHLNHNASVQCILHRDGQVYVALSNGDLIIYFRDKATGHWDFDNKKSISLGTSPNPITRMLVVNEKELWCGCQNQIMILDMKTHNVKSFFAVSQDSKRQIFCMVSSGYGVWVALDRRSQIKLFHSVTHDLLAEVDVSHPVSKMLASSDAIIRQHKAACLRITSLLVCKDLLWVGTSAGVVLTLALPSVTASTSSLSLPIIPQGLTYGHTGHVRFITSVDVMEKETPPQRGSRRSSSTKRRSSSASTSSQTRSNTIIISGGDGYEDFRMNSASEAAGREDSTNHLLLWKT"
     misc_feature    4324..4884
                     /gene="LOC100185174"
                     /note="Guanine nucleotide exchange factor for
                     Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous
                     (DH) domain. It appears that PH domains invariably occur
                     C-terminal to RhoGEF/DH domains; Region: RhoGEF; cd00160"
                     /db_xref="CDD:238091"
     misc_feature    order(4342..4344,4354..4356,4654..4656,4735..4740,
                     4747..4752,4756..4761,4768..4773,4780..4785,4792..4794,
                     4870..4872,4882..4884)
                     /gene="LOC100185174"
                     /note="GTPase interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:238091"
     misc_feature    4987..5394
                     /gene="LOC100185174"
                     /note="PH domain; Region: PH_19; pfam19057"
                     /db_xref="CDD:436928"
     misc_feature    <6397..>7125
                     /gene="LOC100185174"
                     /note="WD40 repeated domain; Region: WD40_2; pfam19056"
                     /db_xref="CDD:436927"
ORIGIN      
cacaggtatttcgatgtctcaaaacctttgtaattattttatctggttaactaagcatacgtggaatgctgagtgattgtttcttacatcattgtgaagtagagcagagttcgcaacatgccagacaaaaacgaaaatgccaaagatgaaaacagaagtataatcgacaacaaccgacggttgctagctcgggatatgttatcttcggttctgccacgttctcgtggaacttcgcccgctagacacactcgttctcgtcggactggaaccgacacgaccgatggactaaaaccaaccaaagtcacgggcggaggcagtcccgcctctgtcaagaagagattgggtgctcgcagtgagagtccgatcatcagcgaaggtggtgaagtgaccataccgggggaagaggagtttaatatcatgttcgacactgtgaggaaactgtcccgagattctgaaacaatgtcaatcaataactattcaaaactcgttgatgctttcagcaaaacaaccggtgatgctaaaagaagtgaaataaagttaaaacaaacactaaacaacatcggtggcaaccatttcgccacttgtgaggggaagagagctaactataaccacacggcggagagcgatcgatcgagaatcgtcccagattacatcacgcgcgtgaatgaatcaagcaaacccaattttgcttcagcgaaaccttctgtcaagagtgcagtgcagcagaaacaagaacctgacagagccatggctaaaagacgaagagagagaagcgggaggggagccaggcgacagcacctacgattagaaaacggtacatcaactgcagatgacagtgcggtaggccaagccaaccaagcgaatgcgataaagtacttgccgacgtatatccaaccagttgtagaaactccgcggcagcagcacaggactgcggattacgatatttttcagcacaagaaacatacgtataccacaggttcaactgcgaacggcagaagttcaagaaaaagctttgttgatcgccaagtggctcgtatcggagacaataggttatcgagtagcagcagcagtgacaatagcagcgtcgaggattccagtactcgatcgtcgacgcgaccagcaaaaagtgtacaggatatttcggacgctgattcagaaagtcagcccggaagaagaacaagaagaaatcgacttcgtaaccgagcgaatcaacaacggcctattcatacgccggattacgtcatagcaactccaccgagaaaagtttcagaccacggagttggaacttccgacattagtagacagcttgccaacaaagtgagctcagtgaacgatcggtcgccgaaaacttccgaggcgagtgattatatgggaaagcagtatcagtctcgcgaaaaacgcccatcggttgattcggtcggcaagatatcaacttcaccgagaaactttcagcctactaccgtgcaaaacttggtggaaggtagaatagatcattccactccgaacgaagctacggtcgtgccgaaggtacagcccaaattgggacgagagaccggtcgtcgcgaatctcgggaaaagttaatcattagtggaaagcaaatatcggcccccttggaagaagtgcaaaaggagggttcaccaacgcaaataaatagcacaaatcaatcaccgaataatccagtgtcggatgtggcagtgcaaagcaacaaggtaacttctagtcctagtattgatgagcatgacaccgccgcaggccgtaaaactgcaatagaaaaaaacggcgtacagctaccacaatacaaaacaaagccagtcggcaatctaagagaactttttaactcacaggaacaactgaagactaagtttggccacgcattcaattctagcaaaccttcagagcaggtcaactctaaaaccgatcaagcgaaacgagataggagaacgtcattaaatgaggctgacgcagatgctgacaatgaacaagtggttcacagtcaaccaatgctaaaggcacgtaaagttagcgaagactattggcctcgggatgaggtgactgaaaaacttttgcaaagtagaagtacccattcatcaataagcagttcaaagccatcgctgatgcctgtaagcgaggctcctactagtactgagcaatcgaatgaagtgcatgcaatgaaggagtcgctcggtcacaagcagtccttggttaccgttatgcacttaccaaaagaaacaaacttgagtgacccccaggttttgtcaagtgagccaatgttcgttaaagggtcgccttgcgataaattgaaacataaccaagacgattctgttttacatgtggcggatgtgatcaacgcaaaacaaaccactgaaaggaatgccgcagcacagactccacggacattggtaagaggtcattccaacagctcagaggcgcaaaggaattcttcaagttccagcaatgcttgccacaagcacacacgctcgcagagcactgatagtacagcttctaaccctgaagcatacactacgttgacgaagcaagttgtttcgcataagccgcctcccactccagtgtggagctttgaagaaacggacagaaagttgagacagtatgataagactctcccaagcgatgcctcgctaaataatacgactgtttgtaatggcacaactacagactcttgggcatcaagtaatgacgcagcagtattacaatcggaactaaatgatcttactcctactttacgagatatttctatcaacggttcaccgttatatgttgcgcccaagtttgccagctacagcgccaacaagccggcgtcggtgcaagtatcacctcacgttcggactacgcaagcccctgtcgtatgtgatgacatggcgcgtcacgcggtggttacttcgtcatcggcttccggtgtaagtaataattcctcaacaatttccacctcttcgagaaagagcagcgtcgtttcactttctactgcattacgcaaaggcagtgcgaacagtgcgtgtagcccgccaccgccgagcacagtggagatagacgagggctgctacacagaagaggacgtcacagctaagggctctccaatgagcgcaccgtttgcccatcctggctttacacttggcgaggatgaaattctggataaaagtgagtttcaaaatggcccttctaacaacaacagaaggcgaaggaaatactctgccgcgggacacagtggttcagatgttagtaatgaatccgttcgttccttgagtgacccgattccagtccgtggcaaagacttagtagggacggaagacggtgcagtagacggcagttatatagtttcattaaaccaacatgatacagcagagactgtaccggatcgtaattctgtcagtgatttgtcattatatagtgagaacacgtccttgcccgatgatgccagtgacaaattggtcaatgagcctgaaaaacgtaaagaacaagaagaccacacacttgctgttcaaggcaccaaaacaggtggaaagaccatcaagaaaaaatcctttagcgatccgaacgccaatgctgttttaacagccggtttaattgggagcatgaatgcggaaatggaaagccctgctctgtacaactcgtcaagcgaaccggctttatcagaacaaactgatgaacttggcgagttgaaccagtttcatatttaccaatctacaaagcactccggaaatcatacaaaagataacgttctcccgtcatctggtatcggggacatgacacattcgattgaagagatgtccaaattattgctcgccgaacacactgttatgtctccaagaagtgcccgtcgaaacatgacactaaaatcgcgcaaaagagcgcagattgaacaaatgaaatccaaagagactgttcctctaaacaacttcatccagaacgaacttcacatccaaatagcagcatcggttgatccggtggtggaggacatttttgaaaaagaagaggagcagtttcagcagatgtatgagagcatgactggagctatccccgaaaagatgccagtcgtccatacacgttcgtgtagtgaacctgtaccaatggacaaactcgaaaatcgtcttgtacaaaaagcatccgaaagaggaagacgcgctgggatcgtacaagcaccatcccttaatgatgtaatgggagataacaggataccaccaccaacggaatcgcccctcaagcacacaaagcaactttcaaactcggtggaccgtattcattcagctaccctacctcgcgctgctggcagcagaggattaggattccaagttgataaactggatatgagaaaacatgtggtgagaaatttgctggaaacagaggaatcgtacgtcaactcgctacggattttatacgagacttacttcaagccactgaaacaaccagaaaaccacgtcgtatgtgagccacgtcttgtggatgagatgtttttccagataccccaaatactgcagcaccacgaaaagttttttgaaaacgttgaagaatgttttgaaaactgggacccagagtctgtaaaaattggcgatgtcttcattcagtcgttcaataaggatatgctactggaagcctacaccagttacatcaagaactttttgaacgccagagaagccgtcaccatcgctacgcaagcaaagaccgcattcaagctcttcctcgagcaatgccagcgagagaatcgcgacaaacaaggtctgtcggacctcatgattaaaccagttcaaagaataccacgatacgaactcattataaaggatctattgaaacatacgccagaggaccatgcagacaggacaagtttactgattgcacaacgtgaaatccatgccctctcagttcaaatgaacaaaggtgaaaaagaagccgaggcagctgaaaggcacgccaaacttctgcaagacattgaacaaatcattgaagggtgtatggagatatctgggattacaaagcgtcggttccttcggcaagatatttgcatagagctaaaatccggcaacaagaaagacagaagtctgtggctcttcaatgacttgttgatgtgtacgacgtccaagaagggaagaacaggttctcttcgtcgtagctccatgaacttatggtccatgacaactgataggatcatggtggattttacgagcaaatacaaatttctttggaagttcccattggaagacgttgaactgctgaaaggcagtactggtccaaaccgccaagtcaccgaaaaacagctgcaacaattaagatgcgaccatgatctattgatacaaatggaaaaacttgcatctgatttatcaaccagccatctgttactggatgaagcggtgaaagatttgttgagtcaaaccagccagaaaataattgagaaacaacagatgacgatgcacggggttggtctaccaggacggttagaaattggaatatcaaccccggatggtatgaagatgtttcaattcgagtttcagagcgaagacaacaagactcagttcgaagttcttttctggaacgcaaagaaaaatttcaacccccaaaagagccggtgggacccgacgtttatgaaggcaattcccatcagcaaaacgcgcaatggaatgcagttttcatgcgcggcgcctaacgttgacacgtctcctggtacaagggaggtatgggtttgcaacactgacggatacgttggacagatttgcttcctcagtattgaacctgagacccttccaacgaagtcaataacagtttgcaactcaaaaatctgctgtatcgctcaagtaccgacgtgggatagaaaactagttcccaccaacacgttcgtcaacgacatttccaaggcccccctcattcacttaccccacggtcgtagaagatcatcgacccacagtaaccccgcccacaagatcatcgcatgggacgataccgatgattcagacgaggataacacaagccctttcagcaccaacagcaactacagcagttacagtatgagcccgtacagtacgaacaacagcatgtcaaacttcgatgaagagatcattcttcccataatgagtccacttcttccgagcgctttccttccaaaaggattcgggtttggggaacctcctgcttatgttccatcggatgaagaatcagatatttctctgtcaacgaatgacggcagtctccttggcgatcacgggtcacgtgcacccacaaactcactcatgcatgcactgctgggcagtggtgcgttcaagaaggatagtgatggttcgacgctccatgggagcttggaagatctcttgagtgacagcacatcttctatgacaaaacatccacctttagctgggaagaacagcatgggtagcaagatgttgtccaaccatggttccatgtggttgggcactgaagacggaaaaatcaaagtgtactccaccgctgaagccatcaaaggcaacaaacagtgcgtacatttgaaccacaacgcatcggtccaatgcattctgcatcgggatggtcaggtatacgtagctttaagcaacggagatctcatcatatattttcgtgataaagcgactggtcactgggactttgacaacaaaaagagcatttcacttggtacttccccgaacccgataacaagaatgttggttgtaaacgaaaaggaattgtggtgtggttgtcaaaaccaaatcatgatacttgatatgaaaactcacaacgtgaagtcgttcttcgcagtcagccaagacagcaagcgacaaatcttctgcatggtctcttctggttatggagtctgggtcgccctcgatcgaagatcgcaaatcaagcttttccacagtgttactcacgacctgttggcagaggtggatgtctcgcatcctgttagcaagatgcttgcgagttccgacgccatcatccgacaacataaggctgcgtgtcttcgcatcacttctttacttgtatgtaaggacctcttgtgggtaggcacgagcgctggagtcgtcctcacgttggcgctaccgagcgttacagccagcacttcttccctttcgctaccaattataccacagggtctgacgtatggccacaccggtcacgtgcgcttcattacgtcagtagatgtcatggaaaaggaaacccccccgcaaagaggatcacgaagatcatcatcgacgaagcggcgatcctcatctgcatctacatccagccaaacccggtcaaacacgatcatcatcagcggaggagacggatacgaagacttccggatgaactcagcaagcgaggcagctggaagagaagacagcacgaaccacttgttgttatggaagacctagcgtcattaattcatctacaataagttgttagacgtaatttcactgtggagcagctgcgtcatggcaggccaggatttaaaccactagaggtagtggtgggcacaaacttgtaactttctaagccattatcgtgacctgcttcccttggttgggtagttacatacgttcttcgttcatttcttatttattttacaacggatgcggttttggatgacatcatgagagtactacctgcttcattcctcgaggatgactggatttaaaccacttctatcctgtttttttttctattcacatcgtcaccttggcatgaccttgcacttcagcggttcactccgcacgagtaacaaatgcagccgctacctaatctattctgtaacttttgatttgttcttggtttgttcgtttactatgattttatgtattttaaacaggtttgtttttgcgttttacttctagactgattcatttttatcattttcgcgtatctttgttcttgtattcgcaatggccgttgaaaattcactaaatctatctgaaaatatacaaatttgaatgtaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]