LOCUS       XM_026840279            1040 bp    mRNA    linear   INV 22-OCT-2018
DEFINITION  PREDICTED: Ciona intestinalis homeobox protein Hox-A7-like
            (LOC100182939), mRNA.
ACCESSION   XM_026840279
VERSION     XM_026840279.1
DBLINK      BioProject: PRJNA187185
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_004191498.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Ciona intestinalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 45% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1040
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="Unknown"
     gene            1..1040
                     /gene="LOC100182939"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 75% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:100182939"
     CDS             495..1040
                     /gene="LOC100182939"
                     /codon_start=1
                     /product="homeobox protein Hox-A7-like"
                     /protein_id="XP_026696080.1"
                     /db_xref="GeneID:100182939"
                     /translation="

MTSSYFLPPPITLRMSGTYPFTAEPPCTYPIQAPQTRDNIGGSQLLQDFSHSYRSKPGTFDYREPTSSSFPKVTTVPPLPPSSMTSYYHSNMTYAPYPYITIPGSHRRRGRQTYSRHQTLELEKEFHYNRYLTRRRRIEVAHTLCLTERQIKIWFQNRRMKWKKENKDIAESNNEWCREEQ"

     misc_feature    order(816..830,834..836,885..887,903..905,942..944,
                     948..953,960..965,969..977,981..986)
                     /gene="LOC100182939"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(822..824,831..833,951..953,960..965,972..974)
                     /gene="LOC100182939"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    825..983
                     /gene="LOC100182939"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
ORIGIN      

actgcccaacaacacgcctgtgcttgtatccaggcatctaagcagtagcagagttgtgtcgcggggcaataaatatgaaatatggcttctctctaccagatgttttgatgctatgttatagcagcttgttttattggccatcatatttttataacgtgctgcttattccaactcgcagctggtttaaggtttgggagggattcggtaactttgtgaggcaattgtgaaaacaaatctgttccagtcagttttcaaaagtacggaattatacgggtgtttggagtctaattattaaaagaatcgagttatacgaaataagtaacaaacataaatcgagtaagttatttgtaacgtatttcgaagcacttgattcagagtttcatgtcgttgtaagaatcgaccaactttagatcaggctcagacttacgtcattcatcccagttgaattattaacagtcagtttaatctcagattagggtatttaccaattagtaatgacgtcatcatactttctgccgccccctataaccctaagaatgagcgggacttaccctttcaccgcagaacccccatgtacttaccccatccaagcaccccaaacacgagataacatcggcggttcacagttattacaagatttctcgcattcttaccgaagcaagccaggaacatttgactacagggagcctacgtcatctagtttcccaaaagtgaccaccgttcccccactccccccctcctctatgacgtcatattaccatagcaatatgacgtatgcaccttatccttacataacaatacccggaagccaccgtagacgtggcagacaaacttattcccgtcaccagacattggaactcgagaaagagtttcattacaaccgttacctaacccgtcgtcgccgcatagaggtcgcccatactttgtgtctcaccgaacgtcagatcaagatatggtttcaaaacagaaggatgaaatggaagaaagaaaataaagatatcgcggaaagtaacaatgaatggtgtcgtgaggaacaatag

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