LOCUS       XM_026838897            1179 bp    mRNA    linear   INV 22-OCT-2018
DEFINITION  PREDICTED: Ciona intestinalis homeobox protein BarH-like 1b
            (LOC778552), transcript variant X1, mRNA.
ACCESSION   XM_026838897
VERSION     XM_026838897.1
DBLINK      BioProject: PRJNA187185
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_004190446.2) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Ciona intestinalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1179
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="Unknown"
     gene            1..1179
                     /gene="LOC778552"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 2 ESTs, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:778552"
     CDS             47..925
                     /gene="LOC778552"
                     /codon_start=1
                     /product="homeobox protein BarH-like 1b isoform X1"
                     /protein_id="XP_026694698.1"
                     /db_xref="GeneID:778552"
                     /translation="

MSNGCDVIFPRSPLSSRKMNRSTSFRIDDLLRGKATFKQEHPEMKLERDHFSPSPSPSTPPDISPSFGMQGIIPRSIQEHLHQRSLAPRIPYTLSPFMNFGMNFMPQNTGYLLNRAAADMMSLYPSVPLATNSLYNQLLLRDRFLQFAEQSGSSRKCRRSRTVFTESQLISLEKRFERQKYLSTPDRMELADALGLTQLQVKTWYQNRRMKWKKQVQQSESSTDSEHDHLSPDSTRPYNQLHRPSADIGTSRNANGDSTPETRRKFETNPEVLSTEYLRNPSTENESRGSST"

     misc_feature    order(518..532,536..538,587..589,605..607,644..646,
                     650..655,662..667,671..679,683..688)
                     /gene="LOC778552"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    524..685
                     /gene="LOC778552"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(524..526,533..535,653..655,662..667,674..676)
                     /gene="LOC778552"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      

aattactttttaaattgttccaggatacataattaataaacttacaatgtcgaacggttgtgacgtaatattccctcgatctccgttaagttcgagaaagatgaatcgatcaacttcgtttcgtatcgatgatctgttgagaggaaaagctacatttaaacaagaacatccggagatgaagttggaaagagatcatttctcaccctccccgagtccatcaactccccccgatatttccccatcatttgggatgcaagggatcatcccaagaagcatccaggagcatctacatcagagatccttggctccccgcatcccctacacgttatcacctttcatgaacttcgggatgaactttatgccacaaaatactggttatttacttaacagagcagctgccgatatgatgagcttatatccttctgtgccccttgcaacaaactccttgtacaaccaacttttactaagagaccgattccttcaatttgccgaacaatccggtagctcgagaaaatgtcgcagaagccgaaccgtattcaccgaatctcaattaatttcgcttgagaagcgttttgagcgacaaaaatatctttccacccccgatcggatggagttagccgatgctttgggcctcacgcaactacaagtaaaaacttggtatcagaatcggagaatgaaatggaagaaacaggtgcaacaaagtgagtcttccacggattccgagcacgaccatctttccccggattccacaagaccgtacaaccagcttcatagacctagcgcagacatcgggacttccagaaacgccaacggcgattcaactcccgaaacccggcggaaattcgaaactaatccagaggtcttgagtaccgagtatttgcgcaatccaagcacagaaaatgaaagcaggggatcatcaacgtgaatcccaatgtacatacaataacaagttattctagctttacgtgtgatttaaatatcccccaaaactgtgttttatacagactttgggttgatttatttttcttgctggcaagtttcattactatatcaccaccgaatgtgggattcgaaccaagtgccttcgtgtttcgatctaagacttttctgtgacaattcatcaactgtttcctcattaatgcgtcgaattgagatgtaataaaacattgacaaaccaaa

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