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2024-05-02 08:32:30, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_026837672             661 bp    mRNA    linear   INV 22-OCT-2018
DEFINITION  PREDICTED: Ciona intestinalis 60S ribosomal protein L9
            (LOC100177652), transcript variant X1, mRNA.
ACCESSION   XM_026837672
VERSION     XM_026837672.1
DBLINK      BioProject: PRJNA187185
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_020179.2) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Ciona intestinalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="14"
     gene            1..661
                     /gene="LOC100177652"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1001 ESTs, 65 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 229 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:100177652"
     CDS             39..614
                     /gene="LOC100177652"
                     /codon_start=1
                     /product="60S ribosomal protein L9"
                     /protein_id="XP_026693473.1"
                     /db_xref="GeneID:100177652"
                     /translation="
MKIIHSSQVVTLPDEVKVSVKGRVVTVRGPRGVLKKNFNHLKVELTKVGTNSVKVDKWFGNRKDLACVRTICSHINNMATGVTKGYRYKMRSVYAHFPINCNITEEGKKIEIRNFLGEKFVRRVDMRAGVKVVSSAKQKDELILDGNDIELVSLSAALIQQSTTVKNKDIRKFLDGIYVSQKTTIVEDEAL"
     misc_feature    39..605
                     /gene="LOC100177652"
                     /note="60S ribosomal protein L6; Provisional; Region:
                     PTZ00027"
                     /db_xref="CDD:240234"
ORIGIN      
cttttacgtgtgtagtgttgtgcagcccacacggcacaatgaagatcatacactcaagtcaagttgtgactttgcccgacgaagttaaagttagtgttaaaggacgagtggttacagttcgtgggccaagaggtgtcctaaaaaaaaatttcaaccatttaaaggttgagttgacaaaagttggtaccaactctgtaaaagttgacaaatggttcggaaaccgtaaggatctcgcgtgcgttcgtacgatctgcagtcacatcaacaacatggccactggtgtcaccaagggttacaggtacaagatgagatctgtatacgctcactttcctatcaactgtaacatcacagaagaaggcaagaaaattgaaatccgtaatttcctcggtgaaaagtttgtgcgaagagttgacatgagggctggtgtgaaagtagtctcctctgccaagcaaaaggatgaacttattttagatggaaatgatattgaattggtttctttatcagctgctctcatccagcaatccaccaccgtaaagaacaaggacatccgaaagttcttggacggaatctacgtctcacagaagacgaccatagtcgaagacgaagccttataaacctcgtcttattaaaatcaaaaatacacgagattccgcacttttaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]