2024-03-29 06:26:52, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_026835747 1953 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor Pax6 (pax6), transcript variant X1, mRNA. ACCESSION XM_026835747 VERSION XM_026835747.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020174.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1953 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="9" gene 1..1953 /gene="pax6" /gene_synonym="Ci-Pax6" /note="homeobox transcription factor Pax6; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 44 samples with support for all annotated introns" /db_xref="GeneID:445643" CDS 117..1607 /gene="pax6" /gene_synonym="Ci-Pax6" /codon_start=1 /product="homeobox transcription factor Pax6 isoform X1" /protein_id="XP_026691548.1" /db_xref="GeneID:445643" /translation="
MATYDSCRQASSMALCFNRESLPHKGHSGMNQLGGMFVNGRPLPDSIRQKIVEFAHNGARPCDISRILQVSNGCVSKILARYYETGTIRPRAIGGSKPRVATPEVVNKIASYKRECPSIFAWEIRDRLLNEGICNNDNIPSVSSINRVLRNLNGDHQTGGFIETTGRDPKSGSQLGLEWSLTCNGWLPQQTMCQEQIAAEGLMGLKGKESVVESEAKDGSSEARLQLKRKLQRNRTSFTQIQVEALEKEFERTHYPDVFARERLATKIDLPEARIQVWFSNRRAKWRREEKIRSQRSSAASDGSDVMRRTNDQQSIGQCGVYSSVTQQHAQANHQLPAYHMPPEPYTGMNGYQMTSLPQTMIEHFPPMHRMHEAPYLYGLSSGGPSNLTPPPHYTSYDHDRRVEEPSHNTIPTPPSSANQPSPDHDHHGSHMQPLDGGIYQASLSGMHVGHQHHALVGAQATDQSASSMIVPPMTALQNPANFHTAEGYWQSGVQG"
misc_feature 192..566 /gene="pax6" /gene_synonym="Ci-Pax6" /note="Paired Box domain; Region: PAX; smart00351" /db_xref="CDD:128645" misc_feature order(207..212,225..227,231..239,243..245,258..260, 294..296,300..302,327..329,336..338,342..347,357..359, 384..404,408..419,474..482,537..539,543..548,555..557, 564..566) /gene="pax6" /gene_synonym="Ci-Pax6" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238076" misc_feature <708..1073 /gene="pax6" /gene_synonym="Ci-Pax6" /note="Homeodomain-containing transcription factor [Transcription]; Region: COG5576" /db_xref="CDD:227863" misc_feature order(813..824,828..830,879..881,897..899,936..938, 942..947,954..959,963..971,975..980) /gene="pax6" /gene_synonym="Ci-Pax6" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(816..818,825..827,945..947,954..959,966..968) /gene="pax6" /gene_synonym="Ci-Pax6" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 819..977 /gene="pax6" /gene_synonym="Ci-Pax6" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
taaaccttactgacattattttaatgacagacatatactgttatatataaaggacttttctgatttaggaaaatttacattttctgtctctggacattttcggcgaaatattttaaatggcgacgtacgattcttgtaggcaagccagcagcatggcgttgtgttttaatagggaaagtcttccacataaaggtcatagcggaatgaatcaattaggcggaatgttcgtcaacggccgaccccttcctgacagtattcgtcaaaaaatcgtcgaatttgcacataacggtgcgcgcccttgcgacatctcgcggatcctgcaagtatcgaacggatgtgtcagtaaaattttagcaagatattacgaaactgggacaatccgtccacgggcaatcggggggagcaagcctcgagtcgcaaccccggaagtcgtcaacaaaatcgcttcctacaagcgggagtgtcccagtatatttgcatgggagatcagggatcgtttgttaaacgaaggaatttgcaacaacgataatatcccgagtgtgtcttccataaaccgcgttcttcgaaacttaaacggtgaccaccaaaccggaggtttcattgagacgactggtcgagatccaaaatcgggttcgcagttggggttagagtggtcattaacttgtaacggttggttgccccagcaaactatgtgccaggaacaaattgcggccgaaggtcttatgggactgaaaggcaaggaatcggttgtggaatcagaagccaaagacggtagtagtgaagcccgccttcaattgaaacgtaaactccaacgaaaccgaacctctttcacacaaattcaagtcgaagctcttgaaaaagaatttgaaaggactcactacccggatgttttcgcacgggaaaggctggcaacaaaaattgatttacccgaagctcgaatacaggtttggttttcgaaccgtcgcgcaaaatggcgacgtgaagagaaaatacgtagccagcgcagcagcgccgctagtgacggctctgacgtaatgcgtagaacgaacgatcaacaaagtatcggccaatgtggtgtctactccagcgttacacaacagcatgcacaagccaaccaccagctcccagcttaccacatgccacccgaaccttacacgggaatgaacggataccagatgacgtcactccctcaaaccatgatcgagcacttcccacccatgcacagaatgcacgaagctccatacttatacgggttatccagtggtggtccaagcaaccttacacccccaccacactacacatcgtatgatcatgaccgcagagttgaagaaccatcccacaacacaatacccacaccccctagctcagccaaccaaccatcgcccgatcacgaccaccacggctctcatatgcaaccgctagacggcggtatataccaagcatcgttgagtggtatgcacgtaggccatcaacaccatgcactagttggcgcccaagctactgaccaatcagcttcgtccatgatcgttcctccaatgactgccctgcagaatcctgccaacttccatactgccgagggttattggcagtcaggcgtccaaggctaaacaaccgcaaaagtgacgttcgatagttcagtcagtacgccatgtttgagttaacctatatattataattcgggcacttgtgtgtggtgaatggccatgagatgatgcccaaactacctccctagtcaaagttaatttatgaacatttccgtaacgcccgtcgtgtattaatctttatatatataagcgcattgaggcgtttatgacttatttacttttgcttgacttgttctgcaaacaatattatacaatgtactatataatgataattaaacggaactgtttcttgtactccgtgaatactgatttgtgctcgttgaaataaatgtcccattcatgtttaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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