2024-04-24 22:41:36, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_026834904 1555 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor Hox13 (hox13), transcript variant X1, mRNA. ACCESSION XM_026834904 VERSION XM_026834904.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020172.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1555 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="7" gene 1..1555 /gene="hox13" /gene_synonym="Ci-Hox13; hox12/13" /note="homeobox transcription factor Hox13; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 14 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns" /db_xref="GeneID:100169888" CDS 48..812 /gene="hox13" /gene_synonym="Ci-Hox13; hox12/13" /codon_start=1 /product="homeobox transcription factor Hox13 isoform X1" /protein_id="XP_026690705.1" /db_xref="GeneID:100169888" /translation="
MEISASRHFPPAGWYHQGHHQIPHGPQGAAYLHFSSGGTPSAQVMANQPNPMYNIHSQYQYHTVGVPTPGTPPMSHGFIANPHPHAGQFPHPATVADQVTQMGGQINFQTIRFNGDRGHEALGLQHGPSHSRKKRQPYSKTQISSLEREYKANNFITRQKRENIARDLKLSDRQVKIWFQNRRVKDKKIKQREIKDNQQHHQTTELQRRDSHTQKQEMYQRHSAMIPIEMKNEHIRIDHIHSHVPGLGSASILM"
misc_feature order(441..455,459..461,510..512,528..530,567..569, 573..578,585..590,594..602,606..611) /gene="hox13" /gene_synonym="Ci-Hox13; hox12/13" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 447..608 /gene="hox13" /gene_synonym="Ci-Hox13; hox12/13" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(447..449,456..458,576..578,585..590,597..599) /gene="hox13" /gene_synonym="Ci-Hox13; hox12/13" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" ORIGIN
aataattttcaaaaatatattttcgggaaaatttatttttttcgaaaatggaaatttcagcaagtcgacactttcctccagcaggctggtaccatcagggccaccatcaaattccacatggacctcaaggtgctgcttaccttcatttttcaagtggaggaaccccaagtgcacaggttatggctaatcaacccaacccaatgtacaacatacacagccaataccaataccacactgtgggtgtaccgacaccgggcacgccgcccatgtcccatgggttcatagccaacccccacccgcacgcggggcaatttccccaccccgctaccgtagctgaccaagtcactcagatgggtggccaaatcaacttccaaacaattcgcttcaacggggaccgaggtcacgaagcgctaggtcttcaacatggaccatcacattctcggaagaaacgccagccttacagcaaaacccagatcagcagccttgagcgtgagtacaaagcaaacaacttcataacgcgacagaaaagagaaaacattgcaagagacctgaagctttctgaccgccaagtcaaaatttggtttcaaaatcgacgtgttaaagataagaagataaagcaacgcgaaataaaagacaaccagcagcaccaccagacgacggagttgcagcgacgagacagccacacacaaaaacaagagatgtaccaacgtcacagtgcaatgattccaatcgaaatgaagaacgaacacattcgaatcgaccacattcactcgcacgttccaggtcttggatcagcctctatactaatgtaaactaaaagagtcatttcaaaacctttgtgcttttatttcaccactgcaacggtctccggccaaaactcgatgtgcatctttctcaatgcaatcttttttcgtttacacaaaccacatggctttacacaattgtaacatatatacttgaacttaaacttcaattatcttccatttggatccgcgcatagtatattgctgtgattatcgtctccatgttggcgtaagagctgtgtatccgcacatctttacattttacaatcagttttatttacgtactgtcgttacattttgtatatttttgtccctagttccatttttctttacattatgtttcatgtgctgcattttcatttaagctggtaggattcttaggacaactatagtaccttgggggtaagataccctttctcaaataatatcctgatcatgttttaaacaattaacaacgccccatgtgagtcgtaaggatacagtttcatatttctttgaatcctctttgttacgatcaaataggactagaaaatagaatgaaaagatttcccttcttcccccaccatactgtgtatgagttgccactcaatatttctctgagaggtcggttgtttaccggcaaaacaaatcctaatccaatgatacatttacctgtaacactatcgacatatcaaattttaatttagcattagtattgaaacatggttttatataagtgcatgcgaagataaattacacaaaaaaagagcatg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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