2024-05-03 08:48:39, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_026834493 2464 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis uncharacterized LOC100184466 (LOC100184466), transcript variant X2, mRNA. ACCESSION XM_026834493 VERSION XM_026834493.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020170.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2464 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="5" gene 1..2464 /gene="LOC100184466" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns" /db_xref="GeneID:100184466" CDS 505..2334 /gene="LOC100184466" /codon_start=1 /product="uncharacterized protein LOC100184466 isoform X2" /protein_id="XP_026690294.1" /db_xref="GeneID:100184466" /translation="
MTSTVAIPQFFGNYPGVIPGSVPGGIPCPIPGTMPPANVPIPTSANGVSYPTVPIQVPIQLPVVPVGGGCYNDGMEVVWHGEFSRLFCNFYPPHVWYLTITNQAPQQKWKFHRDSAKVRFCCQDCGNGWTSMKGRVTFWFYLNYLTNEGFVQFKLYGQQCKKCNSGKFEYVMWYPEEVSKVMCNVYNKVGQTYYGFLQPPIRIDRRPGRPRNQHNAELCQACRDGECDQARPIKTMFNGIIPSPLPNPPPNGALSPSLTPPEALGNPPAPTISIHQSVPTCDVSTVGSNNTVMTSPPAQTTPMQPILTYSVVTCPPKPLSATSNHFIPQNGISPPVSYVYHHPSQFPMLNGGPPPPPVMLPPPRQLMQPLMKPTTDPNTTNGVESVAESTQQVVPVEEATIVELEQCFKENVQIEEKTEIKKSDQTSSALYGRMPTYDGVWWQCMTLKAGGFTCSNYGKPSIFLSADIQAMRALMCIATIASFLAMVCSLLSLDCTTALEANTKPKNIITMVSGVFHIVAGLMCGGAVSWYAWRVTYEFYSPFYQEREFVYEFGSCLYIGWVSSAIALLAGLVLICGACKKNKDEDEHSSYPYTYQPSKVTKETKTEYV"
misc_feature 847..1179 /gene="LOC100184466" /note="Zinc-binding domain; Region: zf-3CxxC; pfam13695" /db_xref="CDD:433409" misc_feature <1810..2226 /gene="LOC100184466" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN
acagcaaagattgaattaggtttactactttacatgtgttacaagaaatgccgcttcattcaacgaaattataaaggcatagctggtttagcttttaatatttcgtcagtggcacatcggacatttgcttgcatagctctcacgctgcataaatgttatgactcgctggtaaatgatatattgcacacacctgttcgtgcgtagtgatgcgcataagcattaccggtcgcatcaatgcgtgtgagggcgtaagaccgacagcggttgtgcctttttcagatgcgtttccgttttgagctgctgtagtagatctctgagcaggacttagatcactagacaccatatttactcagattttgcagagaaaccagacaaggaaattcataggagcgtgtttttgttttatcaagacttgtaaatttaacgaaagacttcttcgtcggagtttgaaaatattcagttcatcaaccagtataaacggaacaagagaattattacgtcagaatgacatccactgtcgctatccctcaattcttcggcaactacccaggtgtgattccaggatccgtcccggggggaattccctgccccataccaggcaccatgccgccagcaaacgtaccaatcccaacaagtgcaaatggggtgagctatcctacagttccaatacaagttcccattcaactaccggttgttcctgttggtggtggatgctataatgatggcatggaggttgtatggcacggtgaattcagcagactcttctgcaacttctacccgccacatgtgtggtacctcaccattacaaaccaagcgccacaacagaaatggaaattccaccgagacagcgctaaagttcgcttctgctgccaggattgtggaaacggttggacatcgatgaagggccgagtcacattctggttctacctcaactatttgaccaacgaaggttttgttcagttcaagttgtatggacagcaatgcaagaaatgtaacagcggaaaatttgaatacgtcatgtggtacccagaggaagtatccaaggtgatgtgcaatgtttacaacaaagttggtcaaacatattacgggttcctgcaaccaccaatccgtattgaccgacgaccaggtcgtccaaggaaccaacataatgctgaactctgtcaagcttgtagagatggggaatgtgatcaggcccgaccaatcaaaacgatgttcaatggaatcattccaagcccactacctaacccaccaccgaacggcgctctttcaccttctttgaccccacctgaagcattgggaaacccccctgccccaaccatctccattcaccagtcagttccaacatgtgacgtcagcacagtaggaagcaacaacacagtgatgacgtcaccacccgcacaaaccactccaatgcaaccaatcctgacttactccgtagtcacgtgcccacccaaaccactgtccgcaacatccaaccatttcattccacagaacggaatttccccacctgtcagctacgtttatcatcatccaagccagttcccaatgctcaacggcggccccccacctcccccggtgatgctgccaccacctaggcaactgatgcaaccactgatgaaaccaaccaccgatccgaatacaacgaatggagtcgaaagtgtcgctgagtcaacgcagcaagtcgtgcctgttgaagaagctactatagttgagttggagcaatgcttcaaagaaaatgttcaaatcgaagagaagactgaaataaagaagtcagaccagacatcaagtgccttatacggcagaatgccaacctatgacggtgtgtggtggcaatgcatgactttaaaagcgggtggttttacttgcagtaactatggcaaaccaagcatctttttatcagctgacatccaagcgatgagagcattgatgtgtatcgccaccatcgcatcttttcttgccatggtatgttcactgctatcgcttgactgcaccactgcgttggaagctaacacaaaaccaaaaaacatcattactatggtgtccggcgtcttccatatagtagctggattgatgtgtggaggtgctgtgtcgtggtacgcatggagagtgacgtatgagttttacagtcctttctaccaagagagggagtttgtttatgagtttggttcctgtctttatattggatgggtgtcttccgctattgctctactagctggtcttgtattaatatgtggagcatgcaagaaaaataaagatgaagatgaacattcttcatatccatatacttatcaaccaagcaaagtaacaaaagagacaaagacagaatatgtttaaagatcttattaactccacacaaaaaataactttcttatcttgaaccaatgccatttcacatttggaacatgttaaactgatttgaacatactgtaaataacctgctttactaaacgattctctttatcaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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