LOCUS       XM_026833866            1168 bp    mRNA    linear   INV 22-OCT-2018
DEFINITION  PREDICTED: Ciona intestinalis homeobox protein Hox-D3-like
            (LOC101242509), transcript variant X2, mRNA.
ACCESSION   XM_026833866
VERSION     XM_026833866.1
DBLINK      BioProject: PRJNA187185
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_020168.2) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Ciona intestinalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1168
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="3"
     gene            1..1168
                     /gene="LOC101242509"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 ESTs, 1 Protein, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:101242509"
     CDS             383..997
                     /gene="LOC101242509"
                     /codon_start=1
                     /product="uncharacterized protein LOC101242509 isoform X2"
                     /protein_id="XP_026689667.1"
                     /db_xref="GeneID:101242509"
                     /translation="

MIENELLPLDLSNKKHSNQQNDDSKQHACENQQTNKDIPENFSASLSFRNRYEAMHREDAIRRHRTAFSRSQCVRLEQEFLNDNYLSRSKRCNLAKDLGLLEGTIKNRRMKEKRKRIAMSAFHNYNQQCMIRSPFISNSRTVFPPQVLPYFPYFPANSPNGYYGSHRDHINAEMHMPETSCESLSSSYAGGTFQSFRTSSSIPH"

     misc_feature    order(566..580,584..586,635..637,653..655,692..694,
                     698..700,701..703,707..715,719..724)
                     /gene="LOC101242509"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    566..721
                     /gene="LOC101242509"
                     /note="Homeodomain; Region: HOX; smart00389"
                     /db_xref="CDD:197696"
ORIGIN      

gaaatacgggtgagacgcttttatttcctcttccatcgattagtctaacagttttagcgagtgccataaacggcaaggtgcatccataatcaaagaaacgataatcagagctcgtttaaggcagctctgtagcataattttctcatttgcctaacagctcgctaattacattcggggttttgcgcgcgaaagaaagaggttcttgtatgtgagaaagctgatgttgttattgcaagctcatgaaacatgcataaccgcttgaggtaattattgtgtcttaattgatacaaacggctgtctatctcagactatatataacactgtggttgtcgttttacgaccattctggaaaacagttcaatctatatacccagtcagcagcatgatcgagaacgagttactaccattggatttatccaataagaaacactccaaccagcagaatgacgattctaaacaacatgcttgcgaaaatcaacaaacgaacaaagatattccagaaaatttcagcgcatcactttcgttcagaaatcgttacgaagcaatgcacagagaagatgcaatacggcgtcatagaacagccttctctcgatcgcagtgtgttcgcttggagcaggaattcttaaatgacaattacttatcaagatcaaagcgttgcaaccttgccaaggatctgggattattggaaggtacaataaagaaccgaagaatgaaagagaaacggaagcggatagcaatgtctgcttttcataactataaccagcagtgtatgatcagaagcccatttataagtaactcacgaactgtgtttccacctcaggttttgccttactttccatactttccagcaaactctccaaatggttattacggatcacatcgcgatcatataaatgcagaaatgcacatgccagagacaagctgtgagtcattatcttcctcatacgcaggagggacgtttcaatccttccgaacatcatcatcaattcctcattagaactctacatctctgtcgcacctatttgttgggtatcgttccacgttctttgctttttattcatcacaacctttgttgcaaatcgcttattaataaaattgtattatgtttgtaccagtttgtactacatagcagagttcgtatacatgtttatacatggactctgatacg

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