2024-05-02 10:07:38, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_026833803 1711 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis basic phospholipase A2 nigroxin A-like (LOC100175981), transcript variant X3, mRNA. ACCESSION XM_026833803 VERSION XM_026833803.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020168.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1711 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="3" gene 1..1711 /gene="LOC100175981" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns" /db_xref="GeneID:100175981" CDS 158..763 /gene="LOC100175981" /codon_start=1 /product="basic phospholipase A2 nigroxin A-like isoform X3" /protein_id="XP_026689604.1" /db_xref="GeneID:100175981" /translation="
MSFLTPAFLCLVCSFVLTSAESRKVSLGIFPDVPGRNMDKMFSKDELEEMLETIEPAGSNELYDSIKYSTTATSLNLAKQIMCYQGKKWNLWNVLLVAAKYGKYGCWCGVGGKGTPVDGIDSCCKSHDLCFNAATKKWAPNYSSVQIYFHKYKMSCHQKSTACYGSGLSLALCECDKKISKCIHAAGNYCSGFAFGQTKNC"
misc_feature 380..715 /gene="LOC100175981" /note="Phospholipase A2; Region: Phospholip_A2_1; pfam00068" /db_xref="CDD:425448" misc_feature order(386..388,398..400,452..454,485..487,599..601) /gene="LOC100175981" /note="putative hydrophobic channel [active]" /db_xref="CDD:153091" misc_feature order(476..478,482..484,488..490,539..541) /gene="LOC100175981" /note="primary metal binding site; other site" /db_xref="CDD:153091" misc_feature order(482..484,536..541,548..550,611..613,683..685) /gene="LOC100175981" /note="catalytic network [active]" /db_xref="CDD:153091" ORIGIN
ccaacacaggccgactgtagaagaatattgttattccaatacgccgactgccccgtttccgtatactgtaatttaaaataccgctgaagcttaatgaagctttatatcgtttttatcacctcatagttaaccagttgtattcgtttggtttcgtagaatgtctttcctaactcctgcgtttctctgccttgtctgctcattcgtattaaccagcgcagaaagtcgaaaagtcagccttggaatatttcctgacgtacctgggcgcaacatggacaagatgttcagcaaagacgagttggaggaaatgttggaaactattgagccagctggttcgaatgaactttatgacagcatcaaatattccacaaccgcaacgtctctaaatctggcgaagcaaataatgtgttaccaaggaaaaaagtggaatttgtggaatgtcctcttggtcgctgcgaaatatgggaaatatggttgctggtgtggcgtcggtggtaaaggaacaccggttgatggaattgacagctgctgcaaatcgcacgatctttgcttcaacgctgctacgaaaaagtgggcaccaaattactcgtcggtgcaaatctattttcacaaatacaagatgtcgtgccatcaaaaatcaacggcttgctatgggagcggattgagtttagcattgtgcgaatgcgacaagaagattagcaagtgtattcatgcagctgggaactactgtagcggttttgcatttgggcaaacgaagaactgttaaaaatcaaaataaacttcgcaagaaaacctctctgacttagtgaataaaaatagctcataaacgaatctattatttcgaaaccaaaaccattaagcgaagcatacttaaggttatcgaaagcgaaggattggtaatattgctgtcggaaatttcaatagccaatgacccggaaattgtcgaatgcagatacttataaaactataggtgaaagcacagatttggcattctttcgcaacagacattgtagaaaatgggtcatgttttagagtttgctgtactgcttatcttaatagttggtttaagtcaagcgaatgctaacacagttttcagtatatttgaagatcaccacgtcagtaaagttaaggaagtaaattcgactgataaattttacaatcgcacatcagtttcttttaaccgaacttacgtgctgaaaaacgaacaccatcggggcatcaaaatatctcgcggcgttgctgtatacaacttaggcttccaaatatcatgctactacggttggtcatatacttcgtacacttccgctactatagcggctgagtatgggcgctatgggtgctggtgtggctataaagggtcggggcaaccggtagacgcaacagacagatgctgtcgatcccacgaccgctgttatggagctgcgttatctagaattcaattggttgtcgcgccagcggtcaaatcattcatcacctcatacgttacagtttgtcagaacagaacgtctacttgcgttggtggattcgatgttgggagaagattgtgcgattgtgatcgtaagctggccaaatgtctgtacgcagcaaggaccagttggagcttctggcattcaggagtgttcgctagacgtcgctgcggagctaacgcgaaataataacacgacttcagcgttaattaagcataactaataccaatacatatgctattacgcta
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]