2024-03-29 08:54:04, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_026833760 2440 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox transcription factor hox2 (hox2), transcript variant X1, mRNA. ACCESSION XM_026833760 VERSION XM_026833760.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020166.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2440 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="1" gene 1..2440 /gene="hox2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns" /db_xref="GeneID:619238" CDS 426..2384 /gene="hox2" /codon_start=1 /product="uncharacterized protein hox2" /protein_id="XP_026689561.1" /db_xref="GeneID:619238" /translation="
MIRETGFINSQPTFAECLNIVSSGIEDNASDVYRKSPIAAAFDRVQQKEETIADSTGSSLHSDCSPTSSRPVSLAFSPISTVSNSPRGKMGFVGPQNNSTVPCASTSATSQSHHYQQSHMSSEYIQGSNFRPHNPPYAPRIQEPTHFDPRFSYRPQFDAPHSAYEEPQDHGAFTLAPPDPPYRGIPSYPTAHVYPVDPFLQYQRSDYDVIRDEQCPDFPWMREKKSGEKTSEGRRVRPAGASRRLRTAYTNTQLLELEKEFHYNKYLCRPRRIEIATLLDLTERQVKVWFQNRRMKHKRQQLQQSQKDNDDSDVTSADEKNDVKETGSDVESDKNDDVTSLEASESGNGKSRHSSSDDVTDDESKVAVPSSPVVKREKYKKSEKKFENIQCGTESAKSSVHDAAVSENVKSEEVLSPKDETVDDVFNTSQTSHVTTSVTTRCHLHMKCSVDHRNFDNNWQHSVNESTKTADQAVTCTHPMNMEHSFPQATFMQRHHTTTANGMYKPLGVITQQDEWHSHTLQGKTHNNEYAYTTQHKHEVPHPTYPPWKPPPQPITHNYHSKPFPLFDSNVNSYNYNNGFDSSFRPSKYRPFIPDNGYSPTHDVNRQQIPHPEWKAPMGKYPKPYTPQYESHGVNISQTAGLLSNAQKLLDL"
misc_feature order(1152..1166,1170..1172,1221..1223,1239..1241, 1278..1280,1284..1289,1296..1301,1305..1313,1317..1322) /gene="hox2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(1158..1160,1167..1169,1287..1289,1296..1301, 1308..1310) /gene="hox2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1161..1319 /gene="hox2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
gcttgtattattacgtcacacaactccttcttgtttgtcgtgataatgcattatcgtgacgtcacaagtgcatgtacgagttatttcaccttgttcgtatttttttaattatgttttaaaagctagatatagtttgaaaaacaacactaattaattaagtattcgcgagtcttctagtgtactgtttgatgacgtaataatacatcgtttattccgcgaatagctgtcctgcgattctatatttatttaaaatcgcgaaacattaaactcaaaatctggcaagttcaaatgtaaacaaaatggcgatcgtgccgctcgacgatatcgccgtatcaaccaatctaaccactgagcactttatttcgtcactgatatatctttgttacgtaggttaagttaggaaagatgtgagccaggatccagagatgattcgcgagactgggttcatcaattcgcaacctacgttcgcagagtgccttaatattgtaagttctggtatagaggacaatgcttctgacgtttatcgaaagtcgccgattgcagccgcgtttgatcgcgtacaacagaaggaagagacaatagcagattccacaggcagcagcttgcacagcgactgcagcccgacgtcttcgcgaccagtgtcgctcgccttctcaccgatatcgacggtttcgaactcgccccgcgggaaaatgggcttcgtcggcccgcagaataactcaacagttccgtgcgcttcaacttcagccacaagccaaagtcatcactaccaacaaagtcatatgtcatcggaatatattcagggttctaactttagaccccataacccaccctatgcaccaaggatacaggaacctacccacttcgaccccagatttagctaccggccccaattcgacgcccctcacagtgcatacgaagaaccccaggatcacggagcgtttacgttagccccacctgacccaccctacaggggaatcccctcttaccccacagctcatgtgtacccagtggatccattcttgcaatatcaaagaagtgattatgacgtaataagagacgaacaatgcccggattttccatggatgagagaaaagaaatctggggaaaaaacgtcagaaggaagaagagttcggcccgcgggcgcatccaggagactacggactgcttacaccaacacccaactgctggaactagagaaggagtttcattataacaaatacctttgccgaccaagaagaattgaaattgcgaccctgctcgacctgactgagagacaggtcaaagtttggtttcagaaccgtcgaatgaaacacaaacgtcaacaattacaacaatcacaaaaagacaatgacgattctgacgtaacaagcgccgacgaaaaaaatgacgtcaaagaaaccggtagtgacgtcgagtcggataaaaacgatgatgtcacttcccttgaagcatcggagagtggaaatggcaaatcacgtcattcttcaagtgatgacgtaactgatgacgaaagcaaggtagctgtcccttcctccccagtcgttaaaagagaaaaatacaaaaagtcggaaaagaaatttgaaaatattcaatgcggtactgagagtgccaagtcatcggtgcatgacgctgcagtttccgaaaatgtcaaaagcgaagaagtattaagtcccaaagacgagacagttgatgacgtgtttaatacgtcacaaacctcccacgtcacgaccagtgttaccacacgttgtcatctgcacatgaagtgcagtgttgaccacagaaattttgacaataactggcaacactctgtgaatgaaagcacaaagacagcagaccaagcagtcacatgcacacatcccatgaacatggaacactcctttcctcaagcaacgttcatgcagcgccaccatacgaccactgccaacggaatgtataaaccgctaggtgtcataacgcagcaggacgaatggcatagccacacactgcaaggcaagacacataacaatgaatacgcttacaccactcagcataaacatgaagtgccccatcccacctaccccccatggaaacccccaccccaacccatcacccataactatcattcaaaacccttccctttattcgatagcaacgtaaactcttacaactacaacaacggtttcgactccagctttcgcccaagtaaataccgacccttcattcccgataacgggtattccccaactcatgacgtaaaccggcagcaaatccctcaccccgaatggaaagcccctatggggaagtaccccaaaccgtacacccctcaatatgagagccacggtgttaacatatcgcaaacagctggcttactgagcaacgctcagaaactgctggatttgtaatttatatcatttgtactaatcgttgtgtgacgtcagcaataaaagcgctaaacata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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