LOCUS       XM_018817911            4760 bp    mRNA    linear   INV 22-OCT-2018
DEFINITION  PREDICTED: Ciona intestinalis zinc finger (C-x8-C-x5-C-x3-H/C2H2)-1
            (zf(c3h/c2h2)-1), transcript variant X1, mRNA.
ACCESSION   XM_018817911
VERSION     XM_018817911.2
DBLINK      BioProject: PRJNA187185
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_020168.2) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Oct 22, 2018 this sequence version replaced XM_018817911.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Ciona intestinalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4760
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="3"
     gene            1..4760
                     /gene="zf(c3h/c2h2)-1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 41 ESTs, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 87 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100170055"
     CDS             41..4024
                     /gene="zf(c3h/c2h2)-1"
                     /codon_start=1
                     /product="uncharacterized protein zf(c3h/c2h2)-1 isoform
                     X1"
                     /protein_id="XP_018673456.1"
                     /db_xref="GeneID:100170055"
                     /translation="

MVKIFVGRLAPTVTAVQLRELFENYGTVSDCDILRDYGFVHMSSEVEAQKAITALDKYELVGSKLSVEMSTSRSMKSCQLTVKNLPRGTNPQDLHKLFKKFGTVTLCRISSDQAVVHMRFPSMATNAVRNLSGEIYRGNVLSVELANNNNRPPNNWPKTTPKEWKASDIFPVIKGSSESLENILQDETNSIELKNEFSSESTVMVNGISNEHSVAETTESIDTTLPTPIIVAISTQSSVTAATHGNGTVVSSTMQPTIEKAHEPREARKRRIQQGLKFLQSPMPWSGSAELYETFLNQLKEMMMHEGTELCREGLFKESVAQLNEAINICAYMKKEGINGYMDNFEKLLMERASVHLTSGNNSAALEDAEKAFNLSNGSNQVALRFKARCLVNCGRRNDALFLMLKFSQVATFDAESAQLCSILKQSMGNMNDEQSLGLSNNKGAIGDGRNRISSSFFPRNPMDGGTFNGSRGGWSMMNGSGDAHNGFLSSYSNFGNGSRSLLGAGTQSLQPNESFSSPLGSQFQPYFNQNSNSSGFSGFSGNFLDNPVPGPITRPGQNLFTNTLYQAPQQKSSIFSQDVLYPMEQTNGLHRESSMPLPIGFRRPQVNSANSYPSSAGSPWNDTTNALSGINSAPTNRGCVDNTIDEELARGIEEELKTNLNHKVNSLTLTSNSKSLWPNSLNSDPGFQGNSTHNTSSYTHFPMNTSKSGFTGSFLGPAMLGISAGNQQQLPVSVSLLSHDTEVVNSTPSSVINNNIGAVETNQSNDSLSEILRNPLHDTHEFKLGCSDCVLRTGPRVTDFRHDDSLVHSCYKNIVLCRRRGNKDWLKIRPRPQPQSKAQLYDGPYYICKDLMAGQDCTYPAVCTFAYNQEEIDVWTLERKGMLNRAWLCKSMDLNYVNKLSLVGLLICKHRGTFDFLCRSCFQNKPRIISMFSGNSNKCTNESCPHLNTEENQQLTHILRESSVRFTEIRFPIQQAILCRHAIRFQCTRGEDCHFAHSLVERDIWAIMEKEDLTAAEVVRQAQEHIKKQAAVNKESENSMLFSEGGDLGSFRWKVKFICSLCHKNGQVNEATKDMKYCTARAQHSWTTNKKVALVHTAKRWVQIRDLPYLKNKVNNGACQINLPVRFELCENFRRQKRCAFSGKCNFAHSQEEMDIWMYLRDNNLKDLEELYEALTKAKQAKLASKNQSFTTDTSNIVLPTDTILHQSSYHCWLCDKECNGQRQWEHHCLSEKHKMRAISDSDGHWKFRKPGGNYKLCERHEKGVCEFDFLPASDNTCSFAHGKEELEEWVHRRQYVINRIRKAQDDHLIDAGDDMNNLINQTPEA"

     misc_feature    47..244
                     /gene="zf(c3h/c2h2)-1"
                     /note="RNA recognition motif 1 (RRM1) and 2 (RRM2) found
                     in RRM-containing coactivator activator/modulator (CoAA)
                     and similar proteins; Region: RRM1_2_CoAA_like; cd12343"
                     /db_xref="CDD:409779"
     misc_feature    50..>934
                     /gene="zf(c3h/c2h2)-1"
                     /note="polyadenylate binding protein, human types 1, 2, 3,
                     4 family; Region: PABP-1234; TIGR01628"
                     /db_xref="CDD:130689"
     misc_feature    order(941..943,950..955,962..967,971..973,1079..1081,
                     1088..1093,1100..1105,1109..1114,1184..1186,1193..1198,
                     1205..1210,1217..1219)
                     /gene="zf(c3h/c2h2)-1"
                     /note="putative protein binding surface [polypeptide
                     binding]; other site"
                     /db_xref="CDD:276809"
     misc_feature    941..1024
                     /gene="zf(c3h/c2h2)-1"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    1073..1165
                     /gene="zf(c3h/c2h2)-1"
                     /note="TPR repeat [structural motif]; Region: TPR repeat"
                     /db_xref="CDD:276809"
     misc_feature    3425..3496
                     /gene="zf(c3h/c2h2)-1"
                     /note="Zinc finger C-x8-C-x5-C-x3-H type (and similar);
                     Region: zf-CCCH; pfam00642"
                     /db_xref="CDD:425793"
ORIGIN      

tttatattataacttttttgtgtttttattttaagggattatggttaagatatttgtagggcgtctggccccgactgttactgcagttcagctgcgtgaattgtttgagaattatggaactgtttctgattgcgatattctacgagattatggattcgttcacatgtcgagcgaagtagaggcacagaaggcaattactgctcttgataaatatgagctcgttggaagtaaactgagtgttgagatgtcaacatcgcgctccatgaagtcgtgtcaactcactgtcaagaatctgccgcgcggcaccaaccctcaggacttgcataaacttttcaaaaaatttggaactgtgacattgtgtagaattagcagcgatcaagcagtggtgcatatgcgttttccatctatggcaactaacgctgttagaaatctaagtggagaaatatatcgtggaaatgttttgtctgtcgaattagcaaataataataatcgaccaccaaataattggccaaagacaactccgaaggaatggaaagcaagcgatatttttccagttatcaaaggaagttctgaaagtctggaaaatattttacaagatgaaactaattcaattgaattgaaaaatgaattttcaagtgaaagcacagttatggtgaatggaatctcaaatgaacactcggttgcagaaaccacagaatcaatcgatactacgctacccaccccaattattgttgcaatatcaacacaaagctctgtaacagctgctacacatggcaatgggactgttgtttcaagcacaatgcaaccaactatagaaaaagcccatgaaccacgagaagctaggaaacgcaggatacagcaaggccttaaatttttacaatcaccaatgccttggagtggtagtgctgagctgtatgagacattcctgaaccaactgaaagaaatgatgatgcatgagggaacagagttatgcagggagggtttgtttaaggaatcagttgctcaattgaatgaagccatcaacatatgcgcatatatgaagaaggagggtatcaatggatacatggataactttgagaagttacttatggagagagcaagtgttcatctaacttccggaaacaattcagctgctttggaagatgcagaaaaagcgtttaatttaagcaacggcagcaaccaagttgcgttgaggtttaaagcaaggtgtttggtgaattgtggtcgtagaaacgatgctttgtttctcatgttgaagttttctcaagttgctacatttgatgctgaatcggctcagttatgcagcatcttgaagcagagcatgggaaacatgaatgatgaacaatcgcttggtttgagtaacaataaaggagcgataggtgatggaagaaaccggatatcttccagtttttttcctcgaaatccgatggatggtgggaccttcaatggatctcgaggaggttggtcgatgatgaacggatccggtgatgcccacaacggattcctctcctcatattccaactttggaaacgggagtagatctctcttgggtgccggtacacaatccttgcaaccgaatgaatcgttttcttccccacttggaagtcaatttcaaccttattttaaccaaaacagcaacagttcgggtttctctggtttttccggaaattttcttgacaatccagttccaggtccaataaccaggccagggcagaacctcttcacaaacactctatatcaagctcctcaacaaaagtcttctatcttttcccaagatgttctttatcccatggagcaaacgaatggacttcatcgagaatcttcgatgcctcttccaattggtttccgccgacctcaggtcaactcagctaattcatatccctctagtgcaggaagtccatggaacgatacaactaacgctctctcaggaataaacagtgcaccgacaaacagaggttgtgtagataacacgattgatgaagaacttgcaagaggaattgaagaagaattaaaaactaacttaaatcataaagtaaattcattaacgcttacatcaaattccaagtcgctttggccaaactcgttaaacagcgatccaggttttcaaggcaattcaacgcacaacacatcaagctatactcattttccaatgaatacctcaaaaagtgggttcactggctcatttctcggacctgcaatgttaggaatatccgcaggaaatcaacaacaattgcctgtgtctgtttcattgctaagccatgatacagaagtagtaaacagcacaccatcatctgttataaacaacaacattggtgctgttgaaaccaaccaatcaaacgactcgctgagcgagatattgcgcaatccacttcatgatacgcacgagtttaaactcggatgttccgactgtgtcttgaggactggaccaagggtcacagacttcagacacgatgatagtcttgtccattcctgctataaaaatattgttctttgtcgtcgccgtggcaacaaggattggttgaaaatacgaccaagacctcaaccgcagtctaaggcccagttatatgatggtccttactatatatgcaaggatctgatggctgggcaggattgcacgtaccctgccgtgtgtacatttgcttacaaccaagaagagattgatgtatggacacttgaaaggaaaggaatgcttaacagagcatggctgtgcaagtcaatggatctgaattatgtgaacaagctttctttggttggtttgcttatctgcaaacatcgtggaacgtttgactttctctgtcgatcttgcttccagaacaaacctcgcatcattagtatgttttcaggcaattcaaacaaatgcaccaatgagagctgccctcatttaaatacagaagaaaaccaacagttgactcatatattgcgcgaatcttcagttcgtttcactgagataaggttccccatccaacaagccattctctgtcgtcatgccattcgatttcaatgcactcgtggtgaagattgtcattttgctcacagtcttgtggagagagatatatgggcaatcatggagaaggaagacctcacagcagcagaggttgtgaggcaagcacaggaacacattaagaagcaagctgctgtcaataaagaatcagaaaattcaatgttgttttcagaaggaggtgaccttggatcatttagatggaaagtgaagtttatttgttcactgtgtcacaaaaatggtcaggtaaacgaagcaacgaaagacatgaaatattgcacagctcgtgcccaacactcgtggactaccaacaagaaagtagcccttgtgcacactgccaagcgctgggtgcaaatacgtgatctgccgtacctaaagaataaggtgaataacggcgcctgccaaatcaaccttccagtaagattcgaactgtgcgaaaactttcgtcgacagaaacgatgcgctttctcaggaaaatgtaacttcgcacattctcaggaggaaatggatatctggatgtatctcagggataataatttaaaagacttggaagagttgtacgaagcattaacgaaagcaaaacaagcaaaattggcttcaaagaatcaatcgtttacaactgatacaagtaatattgttctaccaactgatactattcttcatcagagctcataccactgttggttatgcgacaaagaatgcaatggccagcgacagtgggaacatcattgtttatctgaaaaacacaaaatgcgcgcaatttctgacagtgatgggcactggaaattcaggaaacctggggggaattataaactttgcgaaagacatgagaaaggtgtttgtgagtttgactttctaccagcaagtgataacacttgttcgtttgctcatgggaaagaagagcttgaggaatgggtccatcgtcgacagtacgttataaaccgaatacgaaaggcccaagatgatcatttgatcgacgcaggagatgatatgaacaatttgataaaccaaacaccagaggcttaggatttccttcatttataacccccattgttcgttgttcctcagaaatattcgttttgtttcgtgcgtttcgttaatggcgctactgggcaccctatgacgtagtactcgtagtatctgttctgatttattaaaatactcagattattacccacaaacaccggaactagaaatgaacactccgtacactggggagatgtgttattccaacatgtgccaaactctttagatactaaagcctcagtaaacctttaacgtgtgcctttgaagagtttatctttcagcgtattggtaccgaagtcaccttcatctcaacctcacattttgaaccttttcattagtgccccatcatctcttttcaattctcatttttatacaagcattctctcttttccatagatgccatagccaaccaagccaccctgcttggtcagtactttcttttcattcaaaactagtttaaatagtcttcattgtaaagtctgcactaagtatagtcacactcgtttggaatattcttcaattcttgtcatttttagatacagagaaaattacccctatatttttgtgccacatagcaacacgtcattttttcatacgaacccagtgacgttgtgcactcgtttcatttgtacgattcgcagtttcagatttcggataactgatgtttatgcgttcgatgtgagtaatggtttcaggcgtcctatttgtgaatattaaaataaaatggtcccgaaaa

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