LOCUS       XM_018815614            1647 bp    mRNA    linear   INV 22-OCT-2018
DEFINITION  PREDICTED: Ciona intestinalis homeobox transcription factor Hox1
            (hox1), transcript variant X1, mRNA.
ACCESSION   XM_018815614
VERSION     XM_018815614.2
DBLINK      BioProject: PRJNA187185
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_004190417.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Oct 22, 2018 this sequence version replaced XM_018815614.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Ciona intestinalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1647
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="Unknown"
     gene            1..1647
                     /gene="hox1"
                     /gene_synonym="Ci-Hox1"
                     /note="homeobox transcription factor Hox1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 4 ESTs, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     54 samples with support for all annotated introns"
                     /db_xref="GeneID:445718"
     CDS             107..1204
                     /gene="hox1"
                     /gene_synonym="Ci-Hox1"
                     /codon_start=1
                     /product="homeobox transcription factor Hox1 isoform X1"
                     /protein_id="XP_018671159.1"
                     /db_xref="GeneID:445718"
                     /translation="

MNSYMKYPVHASNSNSYTNHITPQGPFPTSHANKPTVLPHETSAYGIYRTVESIRNHNESTVTPQNEGSPGRSSRENSPTGPVGTTVHSTDNSPYAYSPACLNYNTSTPYCNQLVGADSNYVHQSYSINESYPTSNPLYTSTFSNNSLYSQYNPCILGPNVSRNETNDSVINSCGVQDRISPPNSAYDTPTASPQCTNTLPSNTYDWMKIKRNPPKSIYFSQNKMVEYTYGVTGNNGRTNFTTKQLTELEKEFHFNKYLTRARRVEIAAALRLNETQVKIWFQNRRMKQKKRDKEAEKLNGNKMSQSKSETLHGLKQTSTSSSTNPMYLASSSSNKSTGVTNYNSLMLSHQFQKPAAEADMNIVT"

     misc_feature    order(818..823,827..829,878..880,896..898,935..937,
                     941..946,953..958,962..970,974..979)
                     /gene="hox1"
                     /gene_synonym="Ci-Hox1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    818..976
                     /gene="hox1"
                     /gene_synonym="Ci-Hox1"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(824..826,944..946,953..958,965..967)
                     /gene="hox1"
                     /gene_synonym="Ci-Hox1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      

tattgtggtttactaggttgtttagactttaggtaaaattaaagttaaaacaaaaattgtagcagcaacacacgaaggatctgcacagctcgttaataggtgtaagatgaattcgtacatgaaatacccggttcatgcttcaaactcaaattcctataccaaccacatcaccccgcaaggcccattccctacttctcatgccaataagccaactgtgttaccacatgaaacatctgcatacggaatatacagaactgttgaatccatccgaaatcacaatgaatcgacagtaacgccacaaaatgaaggtagtcctggcagaagctcccgagagaactctccaacaggacctgttggtacaactgtacattcaacagataattcaccctatgcatattcacctgcttgcttaaactataacacaagtactccctactgcaaccaacttgtgggggccgattcaaactatgtacaccaaagttattcaatcaatgaatcgtacccaacctccaatcccttatatacgagcacattttcaaacaattcgttatattcccaatacaacccatgcattttgggtccaaatgtttctcgaaatgaaacgaacgactcggtcattaattcttgcggcgtccaagatcgcatttctccgccaaattccgcgtatgatactcctactgcgagccctcaatgtaccaacacactgccgagtaacacttacgattggatgaagataaagagaaacccaccgaaaagcatatatttttcacaaaacaaaatggtggagtacacctacggagtaactggaaataacggcagaacaaatttcactacaaaacagcttaccgagcttgaaaaagagtttcacttcaataagtacttaacaagagccaggagggttgaaatagcagcagcattgcgccttaatgaaacccaggtaaaaatatggtttcaaaatcgtcgtatgaagcagaagaaaagggacaaagaagcagaaaagttaaacggaaataaaatgtcacaaagcaaaagcgaaacgcttcatggcttgaaacaaacttctacatcttcatcaactaatcccatgtacctcgcatcgtcatcatcaaacaaaagcactggcgtcacaaactacaattccttaatgttaagtcatcagttccaaaaacctgccgcagaggcggacatgaatatagtcacgtgaccttgacatcaattaccagcaaggtagccaacccaacagcgagtaacgtcacacaatatacgtcctcgttttgcgcatcattgtagatgaccaagaaagcgcataaactacacgcattcattttattttatcttttaaaacacccgtgaaacaaaatataaaaaaagtttaagtatttggattcggttttatatatgtacaatattcgtaagcattctgtttattacaatgtagttatattttaacgcctgttacaatttggataacgctttattttaaaatcaacagcacacacaagcctctccctctatatatatatgttgcacagatgtgtaacgttccttcgttttacctcattttgtacatatagtcgatatttcgcaaaaatgtatattacacttgttgtatctgtaatttataaaatgaacttattcttacgtaaa

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