LOCUS       XM_018813865            1779 bp    mRNA    linear   INV 22-OCT-2018
DEFINITION  PREDICTED: Ciona intestinalis homeobox transcription factor Pax1/9
            (pax1/9), transcript variant X1, mRNA.
ACCESSION   XM_018813865
VERSION     XM_018813865.2
DBLINK      BioProject: PRJNA187185
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_020176.2) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Oct 22, 2018 this sequence version replaced XM_018813865.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Ciona intestinalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1779
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="11"
     gene            1..1779
                     /gene="pax1/9"
                     /gene_synonym="Ci-Pax1/9"
                     /note="homeobox transcription factor Pax1/9; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 28 ESTs, 22 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 24 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:445592"
     CDS             14..1474
                     /gene="pax1/9"
                     /gene_synonym="Ci-Pax1/9"
                     /codon_start=1
                     /product="homeobox transcription factor Pax1/9 isoform X1"
                     /protein_id="XP_018669410.1"
                     /db_xref="GeneID:445592"
                     /translation="

MEYYYDIVFYKCNVIYPGVVIYVSYKVIIMINMQTATQNQSVGFSSPLQNPGMVSMMPTSAASNQTFGEVNQLGGVFVNGRPLPNALRLRIIELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPGVVNAIKDYKVRDPGIFAWEIRDRLLSDAVCDKYNVPSVSSISRILRNKIGNVLHPNNPLNPNYVPISNIENSTPPQSTNMRPTYNSPIYNHYMVPPTGKPNMPNAPPTIRGSPMPCHPFYSHSVTEILRGSRFDQPQLQGTAPSNSMTSESISVAPPNGSYHHQLLPVSVPSVIPKLEEWNNMTPYGVPPPTQVTTVHLNGGEKSSPVSRDITSLQQSPTSEENRSSHPLSTLYVTPPANTPYVTSAPQMANNSHHYVTPAYIPSYGHPGWQQQSLPMNGVDPVLTGNPAPQRSVHSLQNGGVQHGYPKLAVSAPQTGDGKNSGNQKLDRPPIHSNGQTSST"

     misc_feature    215..592
                     /gene="pax1/9"
                     /gene_synonym="Ci-Pax1/9"
                     /note="Paired Box domain; Region: PAX; cd00131"
                     /db_xref="CDD:238076"
     misc_feature    order(224..229,242..244,248..256,260..262,275..277,
                     311..313,317..319,344..346,353..355,359..364,374..376,
                     401..421,425..436,491..499,554..556,560..565,572..574,
                     581..583)
                     /gene="pax1/9"
                     /gene_synonym="Ci-Pax1/9"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238076"
     misc_feature    506..>1270
                     /gene="pax1/9"
                     /gene_synonym="Ci-Pax1/9"
                     /note="Sec24-related protein; Provisional; Region:
                     PTZ00395"
                     /db_xref="CDD:185594"
ORIGIN      

ttgtttgttaataatggagtattattacgacattgtattttataaatgtaatgtaatttatccaggcgtggtaatatacgttagttacaaagttattattatgataaacatgcaaaccgccacacagaaccagtcggttgggtttagttcgccgttacaaaaccctggcatggtttccatgatgccaacatcagctgcaagtaatcaaactttcggggaggtaaaccaactcggcggggtatttgtgaacggacgaccgctgcccaacgctctaagactccgaataatcgagcttgctcaactggggattcggccttgcgacattagtcggcaactacgggtctcacatggctgtgtaagcaagatactagcccgttataatgagacaggctcgatcttaccaggagcaatcggtggtagcaaaccaagagtcacaacacctggtgttgtgaacgcgataaaggattacaaagtcagagaccctggtatatttgcatgggagatcagggaccgccttctaagcgacgcagtttgcgataaatacaatgtcccgtcagtaagttccatcagccgaatattaaggaacaaaatcggaaacgtccttcacccaaacaatcctctcaaccctaactacgttcccatcagcaacatcgagaattcgaccccaccacaaagcactaacatgaggcccacctacaacagcccaatatacaatcattatatggtcccaccaacaggtaaacccaacatgccaaacgccccaccaaccatacgaggttccccaatgccttgtcatccgttctattctcattcagtgacagaaatactgagaggatctcgtttcgatcaaccacagttacaaggaaccgcacccagcaattcgatgacgtcagaatcgatctctgtggcgccacctaacggtagttaccaccaccagttgctcccggtgtctgtaccaagcgtcatccctaaacttgaagaatggaataacatgacgccgtacggtgttccgccccctacacaagttacaacggtacatttaaacgggggagagaaatcgtcacccgtgtcacgtgatatcacgtcactgcaacaatcacccacgtcagaggagaatcgatcgtcacatccgctttccactctctacgtcacaccacctgccaacaccccatacgtcacttccgctccacaaatggcgaataattcccaccattatgtgacaccggcctacattccatcgtatggccatccaggttggcagcaacaatctttaccgatgaacggtgtggaccccgtcttaacaggaaacccggcaccccagaggagtgtacacagcttacaaaatggaggcgtacaacacggataccctaaactcgctgtctcggctccccaaacaggagacggaaaaaattccggaaatcaaaaactcgaccgtccacccatccattctaatggtcagacgtcatcaacgtgatgtcatatagatatattatgacgtcataataccttcatgaataaggattgtttccattcgcgaattgaatcactgccgccattgctgcctttggtttattatgcaactcagtgaagccaatattgtatctattcactaactagtagataaacaactaacattataccgccatcttatttgtagttttcacttttctgaaactttttttcgaaaccaaatttgattcgacacaaaacttgaaatttaaacagttttttttgcaccgaagccatattatttgtaataataaacaaaaatgttacgaa

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