LOCUS       XM_009863041             893 bp    mRNA    linear   INV 22-OCT-2018
DEFINITION  PREDICTED: Ciona intestinalis histone H1-delta-like (LOC104266556),
            mRNA.
ACCESSION   XM_009863041
VERSION     XM_009863041.3
DBLINK      BioProject: PRJNA187185
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_004190398.2) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Oct 22, 2018 this sequence version replaced XM_009863041.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Ciona intestinalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..893
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="Unknown"
     gene            1..893
                     /gene="LOC104266556"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 ESTs, 6 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:104266556"
     CDS             173..730
                     /gene="LOC104266556"
                     /codon_start=1
                     /product="histone H1-delta-like"
                     /protein_id="XP_009861343.1"
                     /db_xref="GeneID:104266556"
                     /translation="

MKEKIVMSDSTLPTVPVPSSAVAKKKKSATKTTTSATKVHPKYSDMIVSAVKTLRRPKGSSRQAITKYVQSNYDVGTGAAKHISRNLKSMVDKDELVLASGVGAAGRFRINKSALAGKARTTKQRKSPKKKKKPITKKNKRKTTAKKPRSPVKKRSAKKSPKKKLVKKNKKTVKKAVKKPLKKRK"

     misc_feature    290..496
                     /gene="LOC104266556"
                     /note="linker histone H1 and H5 family; Region:
                     Linker_histone; pfam00538"
                     /db_xref="CDD:425740"
     misc_feature    order(302..304,338..340,428..430,470..472)
                     /gene="LOC104266556"
                     /note="DNA-binding site [nucleotide binding]; DNA binding
                     site"
                     /db_xref="CDD:238028"
     misc_feature    413..448
                     /gene="LOC104266556"
                     /note="DNA-binding site [nucleotide binding]; DNA binding
                     site"
                     /db_xref="CDD:238028"
     misc_feature    506..535
                     /gene="LOC104266556"
                     /note="AKP helix motif (fragment) [active]"
                     /db_xref="CDD:238028"
ORIGIN      

aatttaattaaaactccagtcagtaaagtatattagtttggtttcaaagacagacaaataaaacaaaagttgcaaaaacaaagactttattcggattgttacgtttcgtcgaggtccgtcacttataataaagaaagatgcgttgaaaaattcgagcaccattctcaaatatatgaaagagaagatagtgatgagtgattctacgcttccaaccgttccagttccttcgtccgccgtcgcgaagaaaaagaaatcggctaccaagacgacaacttctgcgacgaaagtccatcccaagtacagcgacatgatcgtctctgctgtgaagacgcttcgtcgtccgaagggttcgtctcggcaagcgattacgaagtatgtccaaagcaactacgacgtcggtaccggagcagcaaaacacatttctcgaaaccttaaaagtatggttgacaaagatgaattggtgcttgcaagtggtgtcggcgcagctggtcgctttaggatcaacaaatccgctcttgctggcaaggctcgaacaactaaacagcgaaagtctcctaagaagaaaaagaagccaattacaaaaaagaacaagagaaagaccacggccaaaaagccaagaagtcctgttaaaaagcgaagtgcgaaaaagtcacccaagaagaagcttgtcaaaaagaacaagaaaaccgtaaagaaagcagtgaaaaagccactgaagaaaagaaagtgaataaccaatttggtcacattaaaacggctcttttcagagccacccgatattaaaatgagatcattttctgtcatcgcccataactgaaaacaccagtttaatatgtcagttagacgatagttcaatgtgcgttagacttggttttaaataaaataggatacca

//