2024-04-26 20:12:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_009863002 1882 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis paired superclass homeobox transcription factor (pitx), transcript variant X1, mRNA. ACCESSION XM_009863002 VERSION XM_009863002.3 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004190397.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Oct 22, 2018 this sequence version replaced XM_009863002.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1882 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="Unknown" gene 1..1882 /gene="pitx" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 19 ESTs, 55 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 44 samples with support for all annotated introns" /db_xref="GeneID:445699" CDS 109..1515 /gene="pitx" /codon_start=1 /product="paired superclass homeobox transcription factor isoform X1" /protein_id="XP_009861304.1" /db_xref="GeneID:445699" /translation="
MEYRTDNYFSSAAAAAVAAHPPYHHYFNQQTNNYNYSPYHSGGYIGGLSGGSISGGSPSSSPPSNTSPLFGGSPGTQIAPSSSATSPFSAGLSRYAGKFSAGFSKLNSGGNGPGASALYPGSGLASLVASGSSYSPQNEKMELQPKSSRVPSHEQVSKSYFEQPYSKCKDSFGSDCQDAPSPSKSVDSVESSVEEESVEKMEELNPASEAGGSEGETDKKNNKNTNNNTDTEKSSPGNACSDDADGDKSKRRQRRQRTHFTSQQLQELEALFARNRYPDMSTREEISAWTNLTEARVRVWFKNRRAKWRKRERNQLTDFKGFGQFNSFMSHYDGYSYNNWASTMTAGTKAFPWGINAGLNPLTTQPALGFPSAAPMPSSIAANTVMPTMSMSNGLSGLASGSSVTSPGCHYNPPAPGYMYRSGTDPCASSLTSLRLKAKQHNPVSPYIGYPAVRDPSAFPPCQYGPTS"
misc_feature 880..1035 /gene="pitx" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(883..885,1003..1005,1012..1017,1024..1026) /gene="pitx" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1381..1434 /gene="pitx" /note="OAR domain; Region: OAR; pfam03826" /db_xref="CDD:427530" ORIGIN
tttgatagaaattatattctgcgtgtaatatataagacttggaaggttctctggaaatttcgctccccaaaagttgcgggaaatttcatcaacaagcgtgaagataagatggaatacagaacggacaattatttctcttctgcggccgctgcggcagttgctgcccacccaccgtatcatcattactttaaccaacaaacgaacaattataactatagcccgtatcacagtgggggctatattgggggcctgtccggtgggtcaatttcagggggttcgccatcttcgtccccgccgtcgaatacctcacccctatttgggggttccccgggaacccaaattgcgccatcaagctccgctacgtcaccgttttcggctggtttgtcgaggtacgccggaaagttttcggccgggttttcgaagctcaattccggcggaaatggacctggagcctcggccctttaccctggcagcggtttggcttcgcttgtggcttctggaagtagttactcgcctcagaatgagaaaatggaactgcagccgaaatcatcgagggtcccttcacacgaacaagtttcaaagtcatattttgagcagccttactctaaatgcaaagactcattcggtagcgattgccaagacgcgccgtcgccaagtaaaagcgtagactctgtagaatcttcagttgaagaagaatcagtcgaaaaaatggaggaactgaatccagcaagcgaagcaggcggcagtgaaggcgaaaccgacaagaagaataacaagaacacaaataacaacacagacacagagaaatctagtccagggaacgcatgtagtgacgatgcagatggcgacaaaagcaaaagacgacaacgcagacagaggacacattttacttcacaacagctacaagaattggaagcattattcgcacgaaacaggtatcctgatatgtcaacgagagaagagatatcagcttggacaaaccttaccgaagcacgagtccgggtctggttcaagaatcgtcgcgcaaaatggcgaaagcgggaacggaatcaacttaccgacttcaaagggttcggtcaattcaacagcttcatgtcccattatgatggctattcatacaacaactgggcaagcactatgaccgccggtaccaaggctttcccatggggtattaacgccgggttaaatccactgacgacccaaccggctctcggttttccttcagcggccccaatgccgagcagtatagctgcaaacactgttatgcccacaatgagcatgagcaacgggttatccggtctcgcttccgggagctctgtcacctcccctggatgccattataacccaccagcgccagggtacatgtatagaagcggcactgatccatgcgcgtcctctttaacctctctacgcctcaaagctaaacagcataatcctgtaagtccatacattggataccccgcagtaagagacccgtctgcgtttcccccttgtcagtatggccccacatcctaaactacacgaatacggctaggtcaaaatcatcccaatccgaattctaacatttcgggtcgaaaagtacaatctatttattacaagttcctgttggtcatcttctgatcagtcaccacagagcagatgggctaatatgtgtttgcagttatgtgatcgtgattatgaaatgcagtcatgttccttcgtatgtcgtgtatatatcattgcaaaagaagcgattttggcgacgcattataatggtgttgctgcccaacagtcgggattatttagcgtcgtaatattgatgtactgttaacttgaacttttgctgaatgtgtcaaaactgaagtttctgctgaaaatcatcaaataaaattaatccttcata
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]