LOCUS       XM_009861895            1754 bp    mRNA    linear   INV 22-OCT-2018
DEFINITION  PREDICTED: Ciona intestinalis homeobox transcription factor Pax1/9
            (pax1/9), transcript variant X2, mRNA.
ACCESSION   XM_009861895
VERSION     XM_009861895.3
DBLINK      BioProject: PRJNA187185
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_020176.2) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Oct 22, 2018 this sequence version replaced XM_009861895.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Ciona intestinalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1754
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="11"
     gene            1..1754
                     /gene="pax1/9"
                     /gene_synonym="Ci-Pax1/9"
                     /note="homeobox transcription factor Pax1/9; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 22 ESTs, 22 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 43 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:445592"
     CDS             91..1449
                     /gene="pax1/9"
                     /gene_synonym="Ci-Pax1/9"
                     /codon_start=1
                     /product="homeobox transcription factor Pax1/9 isoform X2"
                     /protein_id="XP_009860197.1"
                     /db_xref="GeneID:445592"
                     /translation="

MLSCLPQSFESKLSPDELKKLHEKQKEFLDQTFGEVNQLGGVFVNGRPLPNALRLRIIELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPGVVNAIKDYKVRDPGIFAWEIRDRLLSDAVCDKYNVPSVSSISRILRNKIGNVLHPNNPLNPNYVPISNIENSTPPQSTNMRPTYNSPIYNHYMVPPTGKPNMPNAPPTIRGSPMPCHPFYSHSVTEILRGSRFDQPQLQGTAPSNSMTSESISVAPPNGSYHHQLLPVSVPSVIPKLEEWNNMTPYGVPPPTQVTTVHLNGGEKSSPVSRDITSLQQSPTSEENRSSHPLSTLYVTPPANTPYVTSAPQMANNSHHYVTPAYIPSYGHPGWQQQSLPMNGVDPVLTGNPAPQRSVHSLQNGGVQHGYPKLAVSAPQTGDGKNSGNQKLDRPPIHSNGQTSST"

     misc_feature    190..567
                     /gene="pax1/9"
                     /gene_synonym="Ci-Pax1/9"
                     /note="Paired Box domain; Region: PAX; cd00131"
                     /db_xref="CDD:238076"
     misc_feature    order(199..204,217..219,223..231,235..237,250..252,
                     286..288,292..294,319..321,328..330,334..339,349..351,
                     376..396,400..411,466..474,529..531,535..540,547..549,
                     556..558)
                     /gene="pax1/9"
                     /gene_synonym="Ci-Pax1/9"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238076"
     misc_feature    481..>1245
                     /gene="pax1/9"
                     /gene_synonym="Ci-Pax1/9"
                     /note="Sec24-related protein; Provisional; Region:
                     PTZ00395"
                     /db_xref="CDD:185594"
ORIGIN      

tattgtcagccgttgtaatggtatggttccttagataagtgaggttgtataaaagttgatatataaattgttgaatgttagttgtaagaaatgttgtcgtgtctaccacaaagttttgaatccaaacttagtccagacgaactcaagaaacttcacgaaaaacaaaaagaatttttagatcaaactttcggggaggtaaaccaactcggcggggtatttgtgaacggacgaccgctgcccaacgctctaagactccgaataatcgagcttgctcaactggggattcggccttgcgacattagtcggcaactacgggtctcacatggctgtgtaagcaagatactagcccgttataatgagacaggctcgatcttaccaggagcaatcggtggtagcaaaccaagagtcacaacacctggtgttgtgaacgcgataaaggattacaaagtcagagaccctggtatatttgcatgggagatcagggaccgccttctaagcgacgcagtttgcgataaatacaatgtcccgtcagtaagttccatcagccgaatattaaggaacaaaatcggaaacgtccttcacccaaacaatcctctcaaccctaactacgttcccatcagcaacatcgagaattcgaccccaccacaaagcactaacatgaggcccacctacaacagcccaatatacaatcattatatggtcccaccaacaggtaaacccaacatgccaaacgccccaccaaccatacgaggttccccaatgccttgtcatccgttctattctcattcagtgacagaaatactgagaggatctcgtttcgatcaaccacagttacaaggaaccgcacccagcaattcgatgacgtcagaatcgatctctgtggcgccacctaacggtagttaccaccaccagttgctcccggtgtctgtaccaagcgtcatccctaaacttgaagaatggaataacatgacgccgtacggtgttccgccccctacacaagttacaacggtacatttaaacgggggagagaaatcgtcacccgtgtcacgtgatatcacgtcactgcaacaatcacccacgtcagaggagaatcgatcgtcacatccgctttccactctctacgtcacaccacctgccaacaccccatacgtcacttccgctccacaaatggcgaataattcccaccattatgtgacaccggcctacattccatcgtatggccatccaggttggcagcaacaatctttaccgatgaacggtgtggaccccgtcttaacaggaaacccggcaccccagaggagtgtacacagcttacaaaatggaggcgtacaacacggataccctaaactcgctgtctcggctccccaaacaggagacggaaaaaattccggaaatcaaaaactcgaccgtccacccatccattctaatggtcagacgtcatcaacgtgatgtcatatagatatattatgacgtcataataccttcatgaataaggattgtttccattcgcgaattgaatcactgccgccattgctgcctttggtttattatgcaactcagtgaagccaatattgtatctattcactaactagtagataaacaactaacattataccgccatcttatttgtagttttcacttttctgaaactttttttcgaaaccaaatttgattcgacacaaaacttgaaatttaaacagttttttttgcaccgaagccatattatttgtaataataaacaaaaatgttacgaa

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