2024-03-29 21:30:08, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_009860412 1392 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein Hox-A2 (LOC778789), mRNA. ACCESSION XM_009860412 VERSION XM_009860412.3 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq; includes ab initio. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020170.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Oct 22, 2018 this sequence version replaced XM_009860412.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 22% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1392 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="5" gene 1..1392 /gene="LOC778789" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs, 2 Proteins, and 78% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns" /db_xref="GeneID:778789" CDS 52..1392 /gene="LOC778789" /codon_start=1 /product="homeobox protein Hox-A2" /protein_id="XP_009858714.1" /db_xref="GeneID:778789" /translation="
MNMFLSNPFLQMCYPSAISGQIKPETQVPPGFIKNNQTSPPYSLPYLFHSSSTESDKMSSSATECFSPVFTRRSTDTSYKTEMTSDASLSHQLPSDLWARNSFLSQCILQNSKEANSTDFYDDDSAENQQNKRRRTRTNFSTWQLEELEKAFGNSHYPDVYMREALALRLDLVESRVQVWFQNRRAKWRKREHTKKGPGRPPHNAQLTLCSGEPMDPSEIERREKMKQERKKRKQDCNCKSSLNEKQGRKTSNNQDSISPHNDSCKDRNIIQKTCCDSLNAKNNILLPWLVNQPPQSINHELKISENETLGSPLSIENDNQMTDGRKEMSDANPMTPGSRNSHSIENILYKNKIAKPQFFNHVPGTSGTLTSPSSSFGNLPMQSSPLFAEFIRRSSIFSLFPNIPKELQESTAADLNNYTRLYQQYQLQLRVFSDSFSNALNKGKQ"
misc_feature order(451..465,469..471,520..522,538..540,577..579, 583..588,595..600,604..612,616..621) /gene="LOC778789" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 457..618 /gene="LOC778789" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(457..459,466..468,586..588,595..600,607..609) /gene="LOC778789" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" ORIGIN
taattttttcatatttttcctatagggcttttctattttgcgacttgaaatatgaatatgtttttaagcaacccgtttcttcaaatgtgctatccgtccgcaatatcgggacagataaaaccagagacacaagttccaccaggattcatcaaaaacaaccaaacatcacctccatattctctgccgtatttattccactcttcatcgacggaaagcgacaaaatgtcgtcatcagccaccgagtgtttttctcctgtatttactcggcgatctacggatacttcgtacaaaacggaaatgacgtcagatgcaagtttgtcgcatcagttacctagtgatttatgggcacgaaactcatttttatcccaatgtattctgcaaaactcgaaagaagcaaacagcacggatttttacgacgatgattcggcagaaaaccaacaaaataaacgacgacgtacaagaacaaacttcagcacttggcagttagaagagttggaaaaagctttcggaaattctcactatccagatgtatacatgcgagaggcactggcacttcgtcttgatctagtggagtcacgtgtccaggtttggttccaaaaccgacgagcaaaatggaggaagcgtgaacacacgaagaaagggccgggtcgtcctccacataatgctcaactcacgttatgttcaggtgagccgatggacccaagtgaaatcgagcgacgagaaaaaatgaaacaagaaagaaaaaagcgaaaacaagattgcaattgtaaaagcagcttgaatgagaagcaaggcagaaaaacatcaaataaccaagattcgatctcacctcacaacgattcatgtaaagatagaaatattattcaaaaaacatgttgcgactcactgaatgcaaaaaacaacattttgcttccgtggttggtaaatcaacctccacaaagtatcaatcatgagttgaagatcagtgagaatgaaaccttaggttcgcccctttcaatcgaaaacgataatcagatgaccgacggacgtaaagaaatgtctgatgcaaatcccatgacgcctggttcacgaaattcccactcaattgaaaatattctttacaaaaacaaaatcgcaaaacctcaattctttaaccacgtgccaggtacgagtggtacccttacgtcaccaagtagcagtttcgggaatttacccatgcaaagttcccctttgttcgctgagtttatacggagaagcagcatattctcactcttcccaaacatcccgaaagagcttcaggaaagcacagctgcagatttaaacaactatacgcgactctaccagcaataccaattacaattacgtgtattctctgactcgttttccaacgcgcttaacaaaggcaagcaatga
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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