2024-04-27 09:44:50, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_004226074 2262 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein engrailed-2a-like (LOC101242288), mRNA. ACCESSION XM_004226074 VERSION XM_004226074.3 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020170.2) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Oct 22, 2018 this sequence version replaced XM_004226074.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2262 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="5" gene 1..2262 /gene="LOC101242288" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns" /db_xref="GeneID:101242288" CDS 1197..2258 /gene="LOC101242288" /codon_start=1 /product="homeobox protein engrailed-2a-like" /protein_id="XP_004226122.2" /db_xref="GeneID:101242288" /translation="
MMAVSSSKHEDYKPTQQNKANEQRCDQNQNTKRVTPFSIDDILSTPKSAESGVTGGKTNNCVGRVPNDSLTQTQELLHGFYPWQQASYAQWLDSLRRLYVVSGLEPLLQAGSANLQSRYRGPCRRRSSANVLHGKGFAELHRKGLRSPVLSSNSRATKPESSRGLNSPKQSESDTEDKSCRGKRKRIENGGSFSGRSEQDQNSKSDDEEATASDSPLHALEKLTCSTLQYLEKKQPNLHTVAVGQEVRAKRRKCRTAFSTFQLSVLEQRFSCHKYLTPSDRDHIARALGLTASQVITWFQNRRAKLKRDLEELQNDIKTVNKWTPTKLALEGDLKSRENLETKISSPTQRNSV"
misc_feature order(1950..1964,1968..1970,2019..2021,2037..2039, 2076..2078,2082..2087,2094..2099,2103..2111,2115..2120) /gene="LOC101242288" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(1956..1958,1965..1967,2085..2087,2094..2099, 2106..2108) /gene="LOC101242288" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1959..2117 /gene="LOC101242288" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
cgtacattaacaacaatctgaggtattaacacctcatcacgggtgcaattatacagatactagtcacgtggcatcgatcggaaacccagccgtaaagacgaaacgattaagagcgttgtcgggatagggttgtttcacggttgttacacgagccggctgtcaacaactgccggcaaatcccttgttaagtttgcttaatattatgtaccgctaatcgggcgattcaaattgacaacatgttacagaacgtccttgtattccgctttacaaaacagcgccagagaaactgatcgtaaaaaatgcgtcttacaacaaacattactatcaaaggcagagcaaaaataacaaaaatgcgttcgatttgctttctaacatagtcttaacattcctatactgtttgtttccatgagaagtttgaaacggtgccgtatgttcattaattagagcatggtacctgtaagtgtgttaattaagacgtcgattactaccggtatctcggtggagcaacacgggattgatcgtaatgcaaattacactatgactcttttgagattgctttataatcaagcgtgattgtacgaatccaaacgagggctgggtggttcccttgagactcggaatccaatcgctgttcaatgacaagtttatagctttcaatttgaacctgcgacctatttcacgcgctccgccaagcccgatggaatttgcgtctatacaggttccaaggcgtgcgtgagaacgaatatcatcgccaacagcttgaccttcgggactcaagtcttatatagttaactgcgccgcttagcgcgcccgaaaaaataccgcacgagagcggtcccacaagagacggtaatcggggtgtccgttaaaggcattaaaagcagccaactaccgtcgcattacaagttaattcacagctcgtgaggcggctgtagacatgtttagatctgagccgtttagacgtaattgtgttagattagtcaaaagaacaggaagataacaaggtattttagttatagcaagcttttctttaattagaattatagtaatgtgtgttttataaatccgtacaaacaaaatggttgattgtaaaataacattttcaggaattagtaatcacggaagtaaaatgtgagtttgtttttgttttatgcagattttatacgtatgagatttgaatttgtgtaaagatttaaatgatggccgtaagttcgtctaagcacgaagattataaaccgactcagcaaaacaaagctaacgagcagaggtgtgaccaaaatcaaaatacgaaaagggtcaccccgttctcgatcgacgatattctttcgacacccaagagcgctgaatccggagttacgggcggtaaaacaaataactgcgtgggcagggtgcctaacgatagcctaacccaaacgcaggagctcttacatgggttttatccatggcaacaagcttcgtatgctcaatggttggacagtttgcgtcgattgtacgtagtttctggactggagccacttttgcaagctggcagcgcgaatctacaaagccggtacagaggaccatgtcgcaggaggtcttcagcaaacgttttgcatggtaaagggttcgcggaactacatcgtaagggtctacgctcacctgtattaagttctaatagcagagcaacgaaacccgaaagttctagaggtttaaattcaccgaaacaatctgagtctgatactgaagataaaagttgccgaggaaagcgaaaacgtatagaaaatggcgggtctttttccggacgatcggaacaagaccaaaattccaaatcggacgacgaagaagcgacagcttccgattcgcctttacatgctctggaaaaattaacctgctcgactctacagtatttggaaaaaaaacagcctaacctacacactgtagcagttggtcaagaagtccgagctaaacgacgaaaatgtcggacagcattttccacctttcaactttccgtgttagaacagcgttttagttgtcacaaatatttaaccccttctgaccgtgaccatatagccagagcactcggtctcacagcctcacaggtaatcacatggtttcaaaataggagagcaaaattaaaacgagatttggaagaattgcagaacgacattaaaacggttaacaagtggacgcctacgaagctagcattagagggagatctaaaaagtagagaaaatctcgaaactaagatttcttctccgacgcaaaggaactccgtataaaggc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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