LOCUS       XM_004225838            1174 bp    mRNA    linear   INV 22-OCT-2018
DEFINITION  PREDICTED: Ciona intestinalis homeobox protein Hox-D3-like
            (LOC101242509), transcript variant X1, mRNA.
ACCESSION   XM_004225838
VERSION     XM_004225838.2
DBLINK      BioProject: PRJNA187185
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_020168.2) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Oct 22, 2018 this sequence version replaced XM_004225838.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Ciona intestinalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1174
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="3"
     gene            1..1174
                     /gene="LOC101242509"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 3 ESTs, 1 Protein, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 26 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:101242509"
     CDS             377..1003
                     /gene="LOC101242509"
                     /codon_start=1
                     /product="homeobox protein Hox-D3-like isoform X1"
                     /protein_id="XP_004225886.1"
                     /db_xref="GeneID:101242509"
                     /translation="

MIENELLPLDLSNKKHSNQQNDDSKQHACENQQTNKDIPENFSASLSFRNRYEAMHREDAIRRHRTAFSRSQCVRLEQEFLNDNYLSRSKRCNLAKDLGLLEGTIKVWFQNRRMKEKRKRIAMSAFHNYNQQCMIRSPFISNSRTVFPPQVLPYFPYFPANSPNGYYGSHRDHINAEMHMPETSCESLSSSYAGGTFQSFRTSSSIPH"

     misc_feature    order(560..574,578..580,629..631,647..649,686..688,
                     692..697,704..709,713..721,725..730)
                     /gene="LOC101242509"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    560..727
                     /gene="LOC101242509"
                     /note="Homeodomain; Region: HOX; smart00389"
                     /db_xref="CDD:197696"
     misc_feature    order(566..568,575..577,695..697,704..709,716..718)
                     /gene="LOC101242509"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      

cgggtgagacgcttttatttcctcttccatcgattagtctaacagttttagcgagtgccataaacggcaaggtgcatccataatcaaagaaacgataatcagagctcgtttaaggcagctctgtagcataattttctcatttgcctaacagctcgctaattacattcggggttttgcgcgcgaaagaaagaggttcttgtatgtgagaaagctgatgttgttattgcaagctcatgaaacatgcataaccgcttgaggtaattattgtgtcttaattgatacaaacggctgtctatctcagactatatataacactgtggttgtcgttttacgaccattctggaaaacagttcaatctatatacccagtcagcagcatgatcgagaacgagttactaccattggatttatccaataagaaacactccaaccagcagaatgacgattctaaacaacatgcttgcgaaaatcaacaaacgaacaaagatattccagaaaatttcagcgcatcactttcgttcagaaatcgttacgaagcaatgcacagagaagatgcaatacggcgtcatagaacagccttctctcgatcgcagtgtgttcgcttggagcaggaattcttaaatgacaattacttatcaagatcaaagcgttgcaaccttgccaaggatctgggattattggaaggtacaataaaggtttggtttcagaaccgaagaatgaaagagaaacggaagcggatagcaatgtctgcttttcataactataaccagcagtgtatgatcagaagcccatttataagtaactcacgaactgtgtttccacctcaggttttgccttactttccatactttccagcaaactctccaaatggttattacggatcacatcgcgatcatataaatgcagaaatgcacatgccagagacaagctgtgagtcattatcttcctcatacgcaggagggacgtttcaatccttccgaacatcatcatcaattcctcattagaactctacatctctgtcgcacctatttgttgggtatcgttccacgttctttgctttttattcatcacaacctttgttgcaaatcgcttattaataaaattgtattatgtttgtaccagtttgtactacatagcagagttcgtatacatgtttatacatggactctgatacg

//