2024-05-02 08:10:13, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_002131521 741 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis protein dj-1beta (LOC100178410), mRNA. ACCESSION XM_002131521 VERSION XM_002131521.5 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004190352.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Oct 22, 2018 this sequence version replaced XM_002131521.4. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..741 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="Unknown" gene 1..741 /gene="LOC100178410" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 36 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 157 samples with support for all annotated introns" /db_xref="GeneID:100178410" CDS 73..633 /gene="LOC100178410" /codon_start=1 /product="protein dj-1beta" /protein_id="XP_002131557.1" /db_xref="GeneID:100178410" /translation="
MSPTALVIIADGSEEIEAVVVIDVLRRAGVYVTVAGLTDDVTVTCSRNVKIQPDVNIATAAKNVPYDVIILPGGLKGANAMSKATSVKDLLTDQDKSCRLIGAICAAPMVLKSHDIGAGRNVTSYPAFKDELSEMFVYNDYDVVVDGHVVTSRGPGTAMKFALKVVRLLCGDDVTNTTASALLFKL"
misc_feature 85..579 /gene="LOC100178410" /note="Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1; Region: GATase1_DJ-1; cd03135" /db_xref="CDD:153229" misc_feature 385..387 /gene="LOC100178410" /note="conserved cys residue [active]" /db_xref="CDD:153229" ORIGIN
cgattctgacatcaacactcaagtgtatgttgattatgacgtaacaggaagcagcattgttgatattccagtatgtctccaacagcgctcgttataatcgctgatggctcggaagaaatcgaggcggttgtcgtgatcgacgttttgaggagagctggggtttacgtcaccgtcgctggtttaaccgatgacgtcacggtgacgtgtagcaggaacgtcaagatacaacctgacgtaaacatcgccacggcagcgaagaacgttccttatgacgtcataatactacccggtggtttgaaaggagccaatgcaatgtcaaaggcaacatcggttaaagatttattaacagaccaagataaatcgtgtcgtttaatcggagcaatatgtgcggcacccatggtccttaaatcccatgacatcggtgctgggaggaacgtcacatcttacccagcattcaaagatgaactgagcgaaatgtttgtgtataacgactatgatgtggtcgtagatggccatgttgttactagcagggggccgggtaccgcgatgaagttcgcactcaaagttgttcgattgttatgtggtgatgatgtcacaaatactactgcgtctgctttgttgtttaaactgtgatgtcataataactgtgatgtcataataaataatgagttatgcttcacttttcttgtattcacagcaataacattcggggcgctaaaacataagatgtcacccttgttt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]