2024-05-02 19:58:08, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_002130814 2219 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis 3-keto-steroid reductase-like (LOC100180521), mRNA. ACCESSION XM_002130814 VERSION XM_002130814.5 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020174.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Oct 22, 2018 this sequence version replaced XM_002130814.4. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2219 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="9" gene 1..2219 /gene="LOC100180521" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 80 ESTs, 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 204 samples with support for all annotated introns" /db_xref="GeneID:100180521" CDS 922..1926 /gene="LOC100180521" /codon_start=1 /product="3-keto-steroid reductase-like" /protein_id="XP_002130850.1" /db_xref="GeneID:100180521" /translation="
METKPEKFILVTGATSGIGLAFVKRLSMEFKRIYQLHICIACRNMTKGNVVKDELEFRHKGVTVDLVKMDVSNVQSVKCAAEQIRHLYTRLDYVYLNAGILPVSKFHVRYALNTMFSKDVLQMFKTGLGMFTTTDETTKEGVKSIFATNVLGHFVLVNELIPVLTSQSEDHHGQVIWTTSSNASKKSFKLNDVTCQQGSQPYSSSKYAMEGVSIEMNKRLNSLGIYSHVSDPGTVKTNITKGVVAEWLWYFLIPFMWMLRLFLPNFTIYPYNACHSMVWLFQQDPEKLEDRCRYCSYTNVFNTNYIHTETLAPSRFESELIYDQVKKVSKRVCS"
misc_feature 940..1785 /gene="LOC100180521" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl21454" /db_xref="CDD:451247" misc_feature order(958..960,964..969,973..975,1045..1053,1210..1218, 1453..1461,1525..1527,1537..1539,1615..1626) /gene="LOC100180521" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(1366..1368,1459..1461,1525..1527,1537..1539) /gene="LOC100180521" /note="active site" /db_xref="CDD:187535" ORIGIN
gttggtttatcgttcgtaacctttgttttggatgagaaacgggtagtattgttcggcaaggttgtaaagatctaatgaaggagcacgtatcattataaaataatttgttattcgcgtataaaacctataccgtcaagtttagcggccatttaaatactttgtgtcgatgtaaacagccactcctgattagaccccgaagagatggaacttatgtatcgccattaagacttattcgacaaaaacggaggtataaggacattaacgtgtgaaaaacagttgttcgacccttgtgtccaatagcaatcgcgaaaagaacactgacgtgtccaccaagaacagctgttcgaccttcgtgcccattaacaatcgagaaaaatccaagatggcggcgcccatgggaaaagggtttgaggcgttttcacgatttttaaagaatgagcatgttagatacggtagtgcatttttaagttttatgtttttggggtgggtaggacttcgagagttcgctcaagttcgctatgatgttcacagacgcggtcggaatatggaatttgaagaagaggcgaaaaagttcgggctaaaacgacggcaggtaaaatccgtcgaggatgaatacgaggagatgaaaaacaaagatttggataattggttcaatattagagggccccggccggacgaaaactcaaaagaaatgcaagaggagcaacgaagaaagattttggagtcccaaaatgctactgtctaaaacaaacactttcacgttttatttgccactgtgctcggcaatttatttcttttaatattactatgttccaacaatacgtttgtatatgctaccattttcatcatctttacagaatcatacactgttaaacattttgtaaatgtatatgtggttgttggtcaaaaaacttttaaaaaatggaaacaaaaccagaaaagttcattcttgtgacgggagccacaagtggcatcggtcttgcattcgttaaaagattgtcaatggagttcaagcgaatttatcagcttcatatctgcattgcttgccgaaacatgacaaaaggaaatgttgtgaaagatgagttggagtttcgacacaagggagtgacggttgatcttgttaaaatggatgtgagcaacgtccaatctgtgaaatgtgcagcagagcaaataagacatctttacaccaggcttgactatgtatacctgaatgctggcatcttacctgtatcgaagttccatgttcgctatgctttgaataccatgttttccaaggatgttcttcaaatgttcaagactgggttaggaatgtttacgacaactgatgaaacaacaaaggaaggagttaaatctatatttgctactaatgttcttggtcattttgttctggtgaatgagttaattccggtgttaaccagtcaaagtgaggaccaccatggtcaagtcatatggactacatcatcgaatgcatcaaaaaaatcgtttaaacttaacgatgtcacatgtcaacaggggtctcaaccttacagtagttccaaatatgccatggaaggtgtaagcattgaaatgaacaagaggcttaactcattgggaatctacagtcatgtatctgatcctggcactgtcaaaacaaatatcactaaaggagttgtagcagagtggttgtggtattttcttatacctttcatgtggatgttacggctgtttttgccgaattttaccatctacccatacaatgcttgtcattcaatggtgtggctgttccaacaagacccagaaaagttagaggaccggtgccgctactgcagttacaccaatgtatttaacacaaattacattcacacagaaacactggcaccatcccgttttgagtcggaacttatttatgatcaagttaaaaaagtttccaaacgtgtttgctcatagcagcacttatgactacccagattattacattctattcttgttaatatttattgtgctgcagtgtcataattcatattaaaagttcgtgtcatttctgcatgacaggaaactattaattttttgtgtcagtcaaatcatatgacaacgtacatgccaaatcatataggctgataatgcaatagatgtgtagaaattggtgtatgtgtcatgtactgtgcataagcataacacatcactgttatattggttttgtatgattaatataaaataagtgacaaattttactcaccgaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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