2024-05-03 06:29:39, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_002129961 1349 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis claudin-7 (LOC100183075), mRNA. ACCESSION XM_002129961 VERSION XM_002129961.3 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004190488.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Oct 24, 2014 this sequence version replaced XM_002129961.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1349 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="Unknown" gene 1..1349 /gene="LOC100183075" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 246 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 50 samples with support for all annotated introns" /db_xref="GeneID:100183075" CDS 71..718 /gene="LOC100183075" /codon_start=1 /product="claudin-7" /protein_id="XP_002129997.1" /db_xref="GeneID:100183075" /translation="
MVNGGLQIGGFLLGLIGWILGIVTCALPDWRKNDLQGEVIESVIRTTGLWVRCTTQATGLWTCDDYDSFFLGLPVALQAARACVCLSIAMGFLSCICSVFGLECTNISAGNPKMKARITLVAGLLNFIGGVSVGIAVSWFAANVLQEYWNPLGAATSNTRYVYGSALFVGWISMAVSVIAGLVQCCSSWNVDDEDNGRPYTYNPSKPKASSAEYI"
misc_feature 83..616 /gene="LOC100183075" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN
taatttccaatttttttacagttatttctgtatttttaatttctcgtatttatcttgacaaaaatctacgatggtaaacggtggtcttcaaattggagggtttcttttgggccttattgggtggatattgggcattgttacgtgtgccttaccagattggagaaagaacgacttgcaaggtgaagttattgagtctgtgatacgaaccacgggcttatgggtaagatgcaccacgcaggcaactggcttatggacttgcgatgattatgattcattcttcttgggtttgcccgtcgctcttcaggccgctagagcatgcgtctgcctcagtatcgcaatgggtttcttgtcttgtatttgctccgtgttcggattggaatgtactaatatttcagctggtaacccaaaaatgaaggcaagaataacccttgttgccggtttgttgaattttattggaggtgtttccgtcggaatagccgtgtcttggttcgctgccaacgttttgcaagaatattggaatccccttggagcagccaccagtaacaccagatacgtctacggatctgcactttttgttggatggatttctatggcagtcagcgtcatcgctggtcttgtacagtgttgttcatcatggaacgtcgacgacgaagataatggccgtccttacacttacaacccgtccaaaccaaaagcatcttcagctgaatatatttaaatattcaaaccaaaacaatttttatcgttgcaacggattcatcaattgcgcggtttctgttaaaagtccaattcatttcccgatgcacagaattttcgacttctagcatagtgtagtgtgggggaagatgggacacatttagcacataatatccaaatttcctgatcgtgttttaaacaattgggtctataagagtcgcgagaatacggttttataattgattgaattttctttgtttactactaaatgggttggaaaaatagaataaaatggtgtcccatcttccccaccttactatatatgttttctgtgatttggagatatactaaatcatacgtccaacaaatagttggctaactcgactttaaacaacatgtataaattatgcagttcaaaagaaaaacaacaaattaaaaatctatagttttcgaattcgaaaacaaatttgttttacactattctatattggatttggaaaaccagactgagtgattttacgccatcggtcgttctatcgatgttttgtgtctattcccgattgttttgttgtgtgttaaagcaacgagtttaacaaaagctctgttggtattcattcgaagctattcgctgtaaataaagaaaccagaccttg
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]