LOCUS       XM_002129655             781 bp    mRNA    linear   INV 22-OCT-2018
DEFINITION  PREDICTED: Ciona intestinalis 40S ribosomal protein S5
            (LOC100186730), transcript variant X2, mRNA.
ACCESSION   XM_002129655
VERSION     XM_002129655.3
DBLINK      BioProject: PRJNA187185
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_020178.2) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Oct 24, 2014 this sequence version replaced XM_002129655.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Ciona intestinalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..781
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="13"
     gene            1..781
                     /gene="LOC100186730"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1139 ESTs, 35 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 202 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:100186730"
     CDS             129..743
                     /gene="LOC100186730"
                     /codon_start=1
                     /product="40S ribosomal protein S5"
                     /protein_id="XP_002129691.1"
                     /db_xref="GeneID:100186730"
                     /translation="

MEEDYEADVIVAEAPEVKLFGRWTTSDVQINDISLTDYLPVKDKYSKYLPHSSGRYQIKRFRKAQCPIVERLVNSMMMHGRNTGKKLLTVRIIKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQSVDVSPLRRVNQAIWLLCTGAREASFRNIKTIAECLADELINAHKGSSNSYAIKKKDELERVAKSNR"

     misc_feature    180..740
                     /gene="LOC100186730"
                     /note="Eukaryota homolog of Ribosomal Protein S7; Region:
                     uS7_Eukaryote; cd14867"
                     /db_xref="CDD:271246"
     misc_feature    order(180..182,267..275,279..290,387..389,399..401)
                     /gene="LOC100186730"
                     /note="S9 interface [polypeptide binding]; other site"
                     /db_xref="CDD:271246"
     misc_feature    order(279..281,285..287,297..308,315..317,339..341,
                     348..350,354..368,378..392,399..401,519..527,531..533,
                     561..563,582..584,603..605,612..614,630..635)
                     /gene="LOC100186730"
                     /note="rRNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:271246"
     misc_feature    order(411..413,420..425,432..434,630..632,636..641)
                     /gene="LOC100186730"
                     /note="S25 interface [polypeptide binding]; other site"
                     /db_xref="CDD:271246"
     misc_feature    order(516..518,525..527,531..533,738..740)
                     /gene="LOC100186730"
                     /note="S11 interface [polypeptide binding]; other site"
                     /db_xref="CDD:271246"
ORIGIN      

aattaacacccatttttttagtattttttgttaaaaacgatgaccagatagtgtaggggtaatttacatagtttttaaagccaaatggacgccataaacgtatcctaaatcggcgaaacacttttgacatggaggaagactacgaagcagacgttatcgtagctgaagcacccgaggtgaaattgttcggacgatggacaacaagtgatgttcagatcaatgacatctcactcacggactacttacccgtgaaggacaaatactccaagtatcttcctcacagctccggtcgttaccagatcaaacgcttccgtaaagcacaatgtcccattgtggagcgcttggttaactccatgatgatgcatggacgaaacactggcaagaaactgctgactgttcgaatcatcaaacatgcgtttgagatcatccatcttttgactggtgaaaatccacttcaagttttggtgaatgctattatcaacagtggtccacgtgaagattccactcgtattggtcgtgcgggtacagtaagaagacagtctgtggacgtatcaccattacgtcgagtcaaccaagctatctggttattgtgcaccggtgcacgcgaggcttctttccgtaacattaagacgattgctgagtgtttggctgatgaactcattaacgctcataagggctcatctaactcgtatgccatcaagaagaaggatgaacttgagagagtcgcaaaatccaaccgttaaaatgcatcggcaataatggaaataaaatctcaaaccaa

//