2024-05-02 10:16:09, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_002128098 1002 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis prefoldin subunit 6-like (LOC100179681), mRNA. ACCESSION XM_002128098 VERSION XM_002128098.5 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020172.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Oct 22, 2018 this sequence version replaced XM_002128098.4. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1002 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="7" gene 1..1002 /gene="LOC100179681" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 57 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 225 samples with support for all annotated introns" /db_xref="GeneID:100179681" CDS 33..404 /gene="LOC100179681" /codon_start=1 /product="prefoldin subunit 6-like" /protein_id="XP_002128134.1" /db_xref="GeneID:100179681" /translation="
MGAVDAQVRLELQKEFDEIQKVQKEIQKSAELQKKLDSQLNQNTVVKDELEFLEPESNVYKLTGPVLVKQDLGEAKGTVSKRIEYISAEIKRQETLVADLEKQLNKHKESVSKIQAKATAVAH"
misc_feature 66..380 /gene="LOC100179681" /note="Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides...; Region: Prefoldin_beta; cd00632" /db_xref="CDD:238345" misc_feature order(69..71,210..212,219..221,225..227,231..233,237..239, 252..254) /gene="LOC100179681" /note="Prefoldin subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:238345" ORIGIN
attttaggagtaaattagggccttatataaacatgggtgctgtggatgctcaagtaaggctggaattgcaaaaagaatttgatgaaattcaaaaagtccagaaggaaattcaaaaatcagcagaactgcagaaaaagcttgattctcaattaaaccagaatactgttgtgaaagatgaattggaattcttggagccggaatcgaatgtctacaagctgactggtcctgttcttgtcaagcaagatttaggtgaagctaaaggcactgtgtcgaaacgtattgaatatataagcgctgaaataaagcgtcaggaaactttagttgcagaccttgaaaagcagttaaacaaacataaagaaagtgtttcaaaaattcaagcaaaagcaactgcagttgctcattgaataatgtgttatattgtttcttttgtgtcaacttagaaacttgtgtttatgtattgcatgcacaatctgggtatatgtagatgctgatataaaagtgatcagtttgaaagttttacaagttggaagcttaagagcattgtaatattacttttgtaaatttaatgtatttttgtattagtttattcggatcttcagttacatatatttattttaaaagctagttctttaaatctgtttaactcgctaaaaaaatcaaatttcaagtttattgtttttaagtacattaaccatacatgcaatatgctatgttcagttctgtagtatataccattagggaagatgagacacctttagcacataatattcaaatatcctgatcgtgttttaaacaattaacaatggtctgtgggagcgttggaaaaccgttttacaaatctttgtttactaccaaatgggacgagaaaataaaataaaaaggtgtcccatcttctcccaccgtacctcatacaatttaaactaatttaagtattaacgaaattacagacaccatgattatgtggtgttgtcgtgtataatagagaaacagaattctgtgtaa
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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