2024-05-02 15:33:40, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_002127434 878 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis uncharacterized oxidoreductase TM_0325-like (LOC100175900), mRNA. ACCESSION XM_002127434 VERSION XM_002127434.5 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020173.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Oct 22, 2018 this sequence version replaced XM_002127434.4. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..878 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="8" gene 1..878 /gene="LOC100175900" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns" /db_xref="GeneID:100175900" CDS 56..829 /gene="LOC100175900" /codon_start=1 /product="uncharacterized protein LOC100175900" /protein_id="XP_002127470.1" /db_xref="GeneID:100175900" /translation="
MDATKRVVLITGSATGIGAGTAKGFAKEGASLCITGLPSQKDELAEVAKVCKENGSPHVLEVAADLRKQEDMDLLMNETIKTFGQLDVLINNAGIALYGDIEQYTSEEFDNVFSINVKAMMYLTKLAKPYLSRTKGNVVNLCSVVRNWYLPKFIVYGMSKAAIEYLTKTTAADFAEIGVRCNAACPGMVLETNLMNSVVPKEVQQHFREGCSTKLRGRTTTKSEVSDLIRFLASDKATMITGELITIDGGKMLSLTA"
misc_feature 71..814 /gene="LOC100175900" /note="Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl21454" /db_xref="CDD:451247" misc_feature order(89..91,95..100,104..106,161..163,170..175,329..337, 476..484,521..523,533..535,611..622) /gene="LOC100175900" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature order(401..403,482..484,521..523,533..535) /gene="LOC100175900" /note="active site" /db_xref="CDD:187535" ORIGIN
caaatattgtcgttgttagttatgaatctacattcgtgtgcagatactgtgtaagatggatgcaacgaaacgagttgtgcttataacaggcagtgcgactggtataggtgccggaactgccaaaggatttgcaaaggaaggagcctcattgtgcatcactggattaccatcccagaaagatgaattggcagaagttgcaaaagtttgcaaagaaaatggatctccgcatgtattggaagtagcagctgatctaagaaaacaagaagatatggatttgttgatgaatgaaacgatcaagacgtttggacaacttgatgtcttaattaacaatgccggaattgcattgtatggcgatatagagcagtacacaagtgaggaatttgacaatgttttcagcatcaatgttaaagcaatgatgtatctaaccaagcttgctaagccatatctaagcagaactaaaggcaacgttgtcaacttatgcagtgtagtaagaaactggtatcttccaaagtttattgtttacgggatgtctaaagcggcaattgaatatctgacaaaaaccacggctgcagattttgccgagattggagtacgatgtaacgccgcatgccccggaatggttcttgaaactaacctaatgaatagtgttgtgccaaaggaagttcaacagcatttccgggaaggttgttcaaccaaattaagaggacgtacaacaactaaaagtgaagtctcagatctcataaggttccttgcttcagataaggcgaccatgatcactggagaattgattactattgacggtggaaagatgctttcattgaccgcgtgatttctaatactacgtaacgtgatatgaataaatgaaacatcaaactgta
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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