2024-04-19 08:58:53, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_002123997 1577 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis LIM/homeobox protein Lhx9 (LOC778666), mRNA. ACCESSION XM_002123997 VERSION XM_002123997.4 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020174.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Oct 22, 2018 this sequence version replaced XM_002123997.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1577 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="9" gene 1..1577 /gene="LOC778666" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 4 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns" /db_xref="GeneID:778666" CDS 59..1267 /gene="LOC778666" /codon_start=1 /product="LIM/homeobox protein Lhx9" /protein_id="XP_002124033.1" /db_xref="GeneID:778666" /translation="
MQTDICSTQVDANSPALLYTPFFPTSPSNSYEGKFVQKCAGCHQVILDRSYLFVEDSYWHMGCLKCCACAQPLDNSRTCFVKDTRVYCRNDYKRLFGSQLCTHCGVFIEPHELVMRVHDRVYHANYKCFSCCSCQRPFTTGQEFVEVAPNLVCMDCCERESSSEYFDINLHKPGRPKKRKAIMTSSHLDSIGGMAVNYVTEEIRSDTERMNFPPHKSKRMRTSFKHHQLRAMKAYFHQNHNPDAKDLKQLAQETGLTKRVLQVWFQNARAKYRRGRAQNKTTNQSFTKGSGSDVTKSENDVTTQQDSNCSDSITSSIGTSPGSDAYLYDVTSSCDDVTDTRSPNFPNTQPPTAQVSPIYPQPPYSDAQYIGSMTSLSTISTTSALSSTLESVQSAMTSPCSL"
misc_feature 173..334 /gene="LOC778666" /note="LIM is a small protein-protein interaction domain, containing two zinc fingers; Region: LIM; cl02475" /db_xref="CDD:413332" misc_feature order(173..175,182..184,236..238,245..247,254..256, 263..265,320..322,329..331) /gene="LOC778666" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:259829" misc_feature 347..>490 /gene="LOC778666" /note="LIM is a small protein-protein interaction domain, containing two zinc fingers; Region: LIM; cl02475" /db_xref="CDD:413332" misc_feature order(710..724,728..730,779..781,797..799,836..838, 842..847,854..859,863..871,875..880) /gene="LOC778666" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(716..718,725..727,845..847,854..859,866..868) /gene="LOC778666" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 719..877 /gene="LOC778666" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
gtctcgatcacaaaactaattatattttattcgtagggtaaggcggtaataaagcaaaatgcaaaccgatatctgctcaacacaagttgatgcaaacagcccagcacttctatatactccgttctttcctacttctcccagcaactcgtacgaaggaaagtttgttcaaaagtgcgccggatgccaccaagtaatactggatcgttcatatttattcgtggaggacagttactggcacatgggatgtctcaaatgctgcgcatgcgcacaacctctcgataattcccgaacatgctttgtgaaagacacaagggtgtattgtcgcaacgattacaaaaggttattcggatcacaattatgcactcactgcggtgtgtttattgaacctcacgaactcgtgatgcgggttcacgatcgtgtgtatcacgccaactacaaatgcttttcatgctgttcatgccaacgacctttcacgacgggccaggaattcgttgaggttgctccgaacctcgtgtgcatggattgctgcgagagagagtcgtcttccgagtactttgacatcaacctccacaaaccgggtagaccaaaaaagagaaaggcaatcatgacgtcatcacacctggattcgatcggaggaatggctgtcaattacgtcacagaggagatccgcagcgacaccgagcggatgaattttccgccccataaatcgaagcgcatgcgcacaagcttcaagcatcaccaactacgagcaatgaaagcttacttccaccaaaatcacaacccagatgcgaaggatttaaagcagttggctcaagaaactggactgacaaagagagttttacaggtttggtttcagaatgctcgagcaaagtaccgacgaggtcgagcccagaacaaaacaactaaccagagtttcaccaaaggtagtggtagtgacgtcacgaagtctgaaaatgacgtcaccactcaacaagattccaactgctctgattcgataacttcgagcattgggacttccccgggctcggacgcatacctttatgacgtcacaagtagctgtgatgacgtgacagacacccgctcccctaatttccccaacacacaaccaccaacggcgcaagtgagccctatctacccccaacccccttactcggatgcccagtatataggctctatgacatcactatccaccatatcaactacgtcagcattgtcatccacgcttgaatcggtccagtcagctatgacctcgccatgcagtttataaatcatatttattcaccctgtgacgtcgattttacgtcacagcagggttgttctatggcattactttgacgtcacagacacacgatcttaaaggggttgttaattgatcgatgttacgtcactgcctacgtcatcaccacactgttctgtagccatgttccgttgtactttcgctattattacgtcacagtgtttactatgccgtccacgttcttgtttttatatttctattgtcgtccaatctgtcgcacgacacatgacgtcatcaccacctgttaaacacgaataaaaaaacactggatgtcggtaga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]