LOCUS       XM_002123538            1082 bp    mRNA    linear   INV 22-OCT-2018
DEFINITION  PREDICTED: Ciona intestinalis E2F-associated phosphoprotein
            (LOC100187353), mRNA.
ACCESSION   XM_002123538
VERSION     XM_002123538.3
DBLINK      BioProject: PRJNA187185
KEYWORDS    RefSeq; corrected model.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
REFERENCE   1
  AUTHORS   Satou,Y., Yamada,L., Mochizuki,Y., Takatori,N., Kawashima,T.,
            Sasaki,A., Hamaguchi,M., Awazu,S., Yagi,K., Sasakura,Y.,
            Nakayama,A., Ishikawa,H., Inaba,K. and Satoh,N.
  TITLE     A cDNA resource from the basal chordate Ciona intestinalis
  JOURNAL   Genesis 33 (4), 153-154 (2002)
   PUBMED   12203911
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_004190584.1) and transcript sequence (AK113506.1) annotated
            using gene prediction method: Gnomon, supported by mRNA and EST
            evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Oct 24, 2014 this sequence version replaced XM_002123538.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Ciona intestinalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            assembly gap :: added 245 transcript bases to patch genome assembly
                            gap
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-245               AK113506.1         1-245
            246-338             EAAA01004545.1     11975-12067         c
            339-470             EAAA01004545.1     11669-11800         c
            471-579             EAAA01004545.1     11177-11285         c
            580-690             EAAA01004545.1     10820-10930         c
            691-1082            EAAA01004545.1     10167-10558         c
FEATURES             Location/Qualifiers
     source          1..1082
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="Unknown"
     gene            1..1082
                     /gene="LOC100187353"
                     /note="The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: added 245 bases not found in
                     genome assembly; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 24 ESTs, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 218 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100187353"
     CDS             140..988
                     /gene="LOC100187353"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: added 106 bases not found in
                     genome assembly"
                     /codon_start=1
                     /product="E2F-associated phosphoprotein"
                     /protein_id="XP_002123574.3"
                     /db_xref="GeneID:100187353"
                     /translation="

MDSSDDETGFPLDDQVDKFLHGTPQQQTRALQRITGEDVSSSEDEFERTMKDELDEKMKTLEESWIDDYDLPADFPQSTKDAASCSTSKQDVKQTNYYDNVYFDSDEETAESERGKEKKKVVSNADLFYDPQADDDDQIWINKQKERGKIQKSKSESSRKPNQKESPQLSCPACMATVCLDCQRHDTYQNQYRAMFVLNCTVHKDEVLHYKGPKKKVFKRHKRKHDGSSSASDVGYVRSTDAETNQQSTNDSYHPVKCETCKTEIAVYDKDDVFHFFNVIAG"

     misc_feature    524..982
                     /gene="LOC100187353"
                     /note="E2F-associated phosphoprotein; Region: Eapp_C;
                     pfam10238"
                     /db_xref="CDD:431162"
ORIGIN      

caaaaagacagcgtatttgatgtttctcgtttttactttttgttataaaatagtatcgcctccccgctgattttgaaatctaggcgcctatggatacagctactacattacgaacgatagtgacgatgaagagggatgtatggatagctctgatgatgaaactggcttccctctcgacgaccaagttgataagttcttgcatggaacaccacagcagcagacaagagctctacaaagaattactggtgaggatgtcagttcatctgaagatgagttcgaaagaacgatgaaagatgaattggatgaaaagatgaaaacattagaagaatcttggatagatgattatgatcttccagctgattttccacaatccacaaaagatgcggcaagctgttcaacttctaaacaggatgtcaaacaaacaaactattatgataatgtttactttgattctgatgaagaaactgctgaaagcgaaagaggaaaagaaaagaagaaagttgtctccaatgcagatctgttttacgatcctcaagctgatgatgatgatcaaatatggattaacaagcagaaagaaaggggcaaaatacaaaaaagcaaatctgaaagttctcggaaacccaaccagaaagaaagtcctcagctaagttgtcctgcttgtatggcaacagtttgtttagattgtcaaaggcatgacacttatcaaaaccaataccgagccatgttcgtactcaactgcacagtacataaagatgaagtgttgcattataaaggacctaagaagaaagtctttaagaggcataaacgcaagcatgatggttcaagttctgcatctgacgtagggtatgtgagaagcacagatgcagagactaatcaacaatctaccaatgattcttaccaccctgtaaaatgtgaaacatgcaagactgaaattgctgtgtatgacaaagatgatgtatttcacttttttaatgtcattgcggggtagaattaaacacatttaattgaatatattttgcatgtaaataccatgcgattagtttcaaaagtaatcatgaataaattcaactacattttgtaaa

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