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2024-03-29 17:36:16, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_002123146            2794 bp    mRNA    linear   INV 22-OCT-2018
DEFINITION  PREDICTED: Ciona intestinalis homeobox protein Hox-C12a
            (LOC778572), mRNA.
ACCESSION   XM_002123146
VERSION     XM_002123146.4
DBLINK      BioProject: PRJNA187185
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_020168.2) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Oct 22, 2018 this sequence version replaced XM_002123146.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Ciona intestinalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2794
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="3"
     gene            1..2794
                     /gene="LOC778572"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 17 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:778572"
     CDS             1251..2369
                     /gene="LOC778572"
                     /codon_start=1
                     /product="homeobox protein Hox-C12a"
                     /protein_id="XP_002123182.1"
                     /db_xref="GeneID:778572"
                     /translation="
MAFPGPDAVKFGWNFLLTPEWVFQNPAWRVPNFSIYSEYLQMATEQIVHGGVPSRFGLPNFPMKYFESPLSVVQNNFDQSEYSSSANRFEDQKNLNGIKRPLSLLTLADKHELSIADEDVANSDTNHTRQPTDATKLRCQYSRNGWNFQESNFRDQVLKTSTETIPKQQYEKPHLKFGVSTILSLDTISKNQSSLNSEKTQPPTDCQHGHVQDSHTQDLRSTLITQACHPYSQHPVTQYPHYVTHGTYVHSNPVAPILPTWYQGAVRGRGRRGMLRRAVFSDNQRKALEKKFQLQKYIGKPDRKKLALKLGLKDSQVKIWFQNRRMKWRNSQERQMISSSLSTENNKVQVLPIPKCVREQTEGATSQVAVDE"
     misc_feature    2085..2237
                     /gene="LOC778572"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(2085..2087,2205..2207,2214..2219,2226..2228)
                     /gene="LOC778572"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      
tttggtatttctaactaatatatcttatcataaatgtagcaaggaacacgaacgacttgatttcgtttgtttggttgttgatttgactgagaagtcgtaactgcacaagttttgttgatgtcaatcgtgtgatttattgaattgggactcgtacacagttttcaatgctgcgcggttaaagacgttctcgatgaggcgtggcagcttatatcatctcggagtgcttcgagtaactgacgtcacaacagaaaacgttaagtcaataatgtagtatttttacttcagtctgtctcctactgtgaacggaaaaacagattgactttattctactttaatgaacaaattggtgaagttgtttaaggactttctttgcttcgtaaaacaacgagtattaaaattggcaatatttcggtacacgaaatggccataatgcaaatttcacacctttttaaaatccctaacacgtactttcgcttaacagttagcttttaaaagattaaaaggtgagagtgcaacccgtttagctaaacgaattggtcgtgtttgggtttttcagtcacgtactattacattcgcggtaaagcttcgaaatgtagcgaaaaaaacgacaaaggatagtcctcaaataacgtcttcgttcagtaagaaagcagtttggctttgaaaatcaaacgcaacagtgtagaaacgatctgctataaaccacctaaccatgttgtcaggtttcgacagaccattagcgctcactacaggtagtgactgattggtttcatcaacatgtgaccttatcagttggcacgtgcatattgctaaccattatttcttacggaaggagcagcacaaataaatacatctttattccaagtggaattttaaatggttaatgttgattgagatgtggtttaaagtttactaatggtaaattataattttattttatagcgatgagttagaattatacctttgcgtttttcttttggagataatgttgccacgctgcttcttccacaggctaacataaattcaaatgtccaggataaagaaacgagagaattaaaagaaaaaatgggggattagccattttgggtgagcaagacgcctctgtaatccacacggcattaaaatcaagaaacgtatgcgaaaaattccatttgggaattctgcaagtgaccgtctctgactttcttgcgaagcactttaagtcgtacagtggtggtttaaacaagttataatttatttcatagaaaaccatggcctttccaggccctgacgccgtaaagttcgggtggaactttttgcttacaccggagtgggtgttccaaaatcccgcctggagggtgccgaatttctcgatctactcggaatatttgcagatggcaacagagcaaattgttcatggtggggttcctagccgctttggactgccaaattttcctatgaagtatttcgaatcaccgctttctgttgtgcaaaacaacttcgaccaatcagagtattcgtcatctgcaaatagatttgaagatcaaaagaacctgaacggcattaaaagacctctctctttattaacactagcagataagcacgaattatccatcgccgacgaagacgttgcaaattctgatacaaatcacacccgtcagccaacagatgcaacgaaattgcggtgccaatactcgaggaacggatggaatttccaggaatcaaattttcgggatcaagtattgaaaacatcaactgaaaccatcccaaaacagcaatacgagaagccccacctaaagtttggagtaagcactattctttcattggataccatttcgaaaaatcagagctcgctaaactcagaaaaaacacaaccgccaactgattgtcaacatggtcacgtgcaagattcacacacacaagatctaagatctactttgattacacaagcgtgtcatccgtattctcaacacccggttacacaatatccacattacgtcacccacggaacatacgtgcactcaaaccctgtggccccaattttgccaacgtggtatcagggggcggttcgtgggcggggtcgccgcggaatgctaagaagggcggtattctctgataatcagaggaaagcactcgaaaagaagtttcagctccaaaagtacattgggaagcccgatagaaagaagttagcgctcaagcttggcctaaaagactcccaggtaaaaatctggttccaaaaccgaagaatgaagtggagaaattcccaagagcgtcaaatgatttcgtcatctttgtcaacagaaaacaacaaggtgcaggttctaccgattcccaagtgcgtaagggagcagactgagggggctacaagtcaggttgcagttgatgaataaagcagcagtaattttaaatatcaacacactgaatgttccttgtataactgtacctggcacagcgattataatttgaaacaagtttatttttgtataccaacaaacacaagcgtctccattctaagaaatcagcaactgtagcaaatatagtctggctatacacgtataaaataaggtattgtcatcacgataagaaaatgtgatttatatgttatgtgattgtctattacaactggtccatattgctcgaatgtctagtttgcttgttgtttaaatttaaggttcaagttcatcatattaatctagcgctcatgtgtaccagtgtcacttcactttagctatagttcccataaatacgcgaggacttagtgcaaaaccaacaaagtatcgagtttacttgctatgaatacaccaccggcctagaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]