2024-05-02 15:10:06, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_002122203 1348 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis phytanoyl-CoA dioxygenase domain-containing protein 1-like (LOC100176685), mRNA. ACCESSION XM_002122203 VERSION XM_002122203.3 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020176.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Oct 22, 2018 this sequence version replaced XM_002122203.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1348 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="11" gene 1..1348 /gene="LOC100176685" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:100176685" CDS 147..941 /gene="LOC100176685" /codon_start=1 /product="phytanoyl-CoA dioxygenase domain-containing protein 1-like" /protein_id="XP_002122239.1" /db_xref="GeneID:100176685" /translation="
MSQESSTWLQTQDFLEWKDKFDRDGYLVVKDILSPEEIKAYQRIFEELSTGSQTTTHRHDLGSHTTRKVKEHENISQTMWPSLFIPNLTQGILHTRALEVARSVLGSDMTFDFDMLISKAPHTDTETPMHQDESYWPDMPDKRAVTIWVALDNATVDNGCMWFVPGSHKLPLRPFKCAKEGHHVIICEGDKDELHAAPITAGSCTLHHGRTVHYTRGNSTDFKRRAFIMNFRPAEMVQWERNHDFDHGKSKGVQGDEHFAKETS"
misc_feature 207..824 /gene="LOC100176685" /note="Phytanoyl-CoA dioxygenase (PhyH); Region: PhyH; pfam05721" /db_xref="CDD:399029" ORIGIN
gcttacttacaatagttgaagctggtggtataagtaacacatggtacataataacaaactacagcgttgagttttgtgttatataggcctacttatgacagacgagtttctatataaattaggcgtctagttaaattattacaataatgtctcaagagagttccacttggctacaaacgcaggactttttggaatggaaagacaagtttgacagagacggttatttggtagttaaagatattttaagtccagaagaaataaaagcatatcaaagaatattcgaggaactgtcaactggaagccaaacaacaacacacagacatgacctcgggtcgcatacaacgcgtaaagttaaagaacacgaaaatatttcccaaactatgtggccgtccttgttcataccaaacttaacgcaaggtattttgcacacgagggctctcgaagtcgcacgaagtgttttaggtagcgatatgacatttgatttcgacatgttaatatcaaaggccccccatacagatacagagaccccaatgcatcaagacgaatcatattggcctgatatgccagataaacgagcggtaacaatctgggtagcattggacaacgctactgtagataacggctgtatgtggtttgttcccgggtctcataagttaccattaaggccattcaaatgtgcgaaggagggccatcatgtaataatatgcgagggcgataaggatgagctacatgctgccccgattactgcgggttcctgtactttacaccacggtcgtacagttcactatactagagggaacagcaccgattttaaacgaagggcgtttattatgaatttccgtccagcagaaatggtacagtgggaaaggaaccatgattttgaccatggaaaatcaaagggggtgcagggcgacgaacactttgctaaagaaacgtcttgaaccagttttttttatctgaaacagtccttgcactaattgtacagtttataactgtctggagaaaacaggagagcggagctcaaataaatgaacacgtttcaatataatattgataaagacaaagttacattttttaatgtatcactgataaagactattcgtataaattgccgctttgtatactatataatatgtaggctatatctacatttccaggtaatttgcgatacgactaaactaattctcagtcaactctttttagattttacttagattcccatgattaaatcagcttcagttacgtgcattataaaaaaggttgcatcgattaatgtaccccacaccataagcgacctttttcgaacgtagcctacatgcattctcaataataaacaaagctttgccga
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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