2024-05-02 13:21:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_002121887 1295 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis protein ADP-ribosylarginine hydrolase-like protein 1 (LOC100185459), mRNA. ACCESSION XM_002121887 VERSION XM_002121887.5 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004190420.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Oct 22, 2018 this sequence version replaced XM_002121887.4. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1295 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="Unknown" gene 1..1295 /gene="LOC100185459" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 55 samples with support for all annotated introns" /db_xref="GeneID:100185459" CDS 73..1140 /gene="LOC100185459" /codon_start=1 /product="protein ADP-ribosylarginine hydrolase-like protein 1" /protein_id="XP_002121923.1" /db_xref="GeneID:100185459" /translation="
MENYRCAMLLSAVGDAMGYKNGEWEQNPSGCEIMKELDSFGGFGAISLEADTWPVSDDTIMHMATARALVEKANSKKDELFSEMASCYVDAIESASARRPDPSYLEGCASLRPGRTMGWHVPFNRHGTGFGAASKAMCIGLVYWKPTQQKELIRIALESGRMTHNHPLGFTGSVCTALFTSFILQSKPIVTWGRSILSSFDIMKAYCKKTIRSNQEYREHWCYFETKWEIYLKQRGILNEGEDVVKFPPKYDMETREKIYKSWSSEGRAGRRGHDAPMIAYDALMVAQQSSGNKWQELCYHAMIHGGESDSTGCIAGFWYGLMYGLEGIPLGHYDHIEFKDELEELAAKLYETSR"
misc_feature 91..1062 /gene="LOC100185459" /note="ADP-ribosylglycohydrolase; Region: ADP_ribosyl_GH; pfam03747" /db_xref="CDD:427484" ORIGIN
tggtcaaatgtaaaccatagttgcctttggcgtattcagtatacagtcagcagcgcggttacgaacagcaccatggagaactatagatgtgcgatgctactgtcagcggtaggggatgcgatgggttacaaaaacggagaatgggaacagaatccaagtggttgtgaaataatgaaggaactggatagttttggaggattcggcgctatcagtcttgaggcggacacttggccggtatcagatgacaccataatgcacatggcaactgcccgtgcgctcgtagagaaagcaaatagcaagaaagacgagttgtttagtgagatggcttcatgttatgttgatgccattgaatcagcttctgcaagacgaccagatccatcctacttagagggatgcgcttcgttacgtcctggtagaaccatggggtggcatgttccatttaatcgacatggtacaggtttcggtgcagcaagtaaagcaatgtgtattggccttgtatattggaaaccaactcaacaaaaggaattaataagaattgctttggaaagcggaagaatgacacacaaccaccctttgggttttaccggttcagtttgcacagctctgtttacatcatttattctgcaatcgaagccgatcgtgacgtggggtcgaagtattctatcctcgtttgatattatgaaagcctactgcaagaaaacaatacgaagcaaccaagagtacagagagcattggtgctactttgaaaccaaatgggaaatatatctcaagcaaagaggaattctgaatgaaggagaagatgttgtgaaatttcctccaaaatatgacatggaaactcgagaaaagatttataagtcttggagttcagagggtcgagcaggaagaagaggccacgacgccccaatgatcgcatacgatgccctcatggtggcgcagcagagctccggcaacaagtggcaagagttgtgttaccacgccatgatacacggaggagaaagcgactccacaggatgtattgctggcttctggtatggtcttatgtacggattggaaggaataccgctaggccattacgaccacattgaatttaaagatgaactggaggaattggccgccaaattgtacgaaacatcgcggtgaggtccaacatgccaactttaatatcagaccaaacaaaagaaggcgctttgaagtttgataaaggccctatgtcttcgctacgtcgtgagtcgttaacgtcttaacgtttacaacttccaccattgtttaccaataaaccacgagtcacagctttg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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