LOCUS       XM_002121871            2204 bp    mRNA    linear   INV 22-OCT-2018
DEFINITION  PREDICTED: Ciona intestinalis E3 ubiquitin-protein ligase
            RNF34-like (LOC100178192), mRNA.
ACCESSION   XM_002121871
VERSION     XM_002121871.5
DBLINK      BioProject: PRJNA187185
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_020178.2) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Oct 22, 2018 this sequence version replaced XM_002121871.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Ciona intestinalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2204
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="13"
     gene            1..2204
                     /gene="LOC100178192"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 17 ESTs, 3 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:100178192"
     CDS             334..1362
                     /gene="LOC100178192"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase RNF34-like"
                     /protein_id="XP_002121907.3"
                     /db_xref="GeneID:100178192"
                     /translation="

MPCACCSAQFSILKWKSRCSNCFQLFCSDCSIGRECRPCCYVNRCKSSKTSLMQIKVKDLQGYLKNFKIEHRTCKEKHELVKLIQNQFGITSSENIQPPSSYTTHDNRANEDQRRDDNSDQNQSENSSTDDPAVHLPTPPTYQRTQESFPTAEQFNVSSSGNDSSIATPIVIEDTEESTSTHNNANTVENNEVTEETSTSYAFSSPAVERTAKKTKIGLSEIKSVQEIESYSIKQLKTLLQENLVNYKGVLERTELVNRVKNLYEDHVSNESNISDDITEENSSSYVTNKDELFCKICWERPRDCVLLECAHMSTCITCGKQLRECPICRQHIVRAVRVFKS"

     misc_feature    334..450
                     /gene="LOC100178192"
                     /note="FYVE domain like superfamily; Region: FYVE_like_SF;
                     cl28890"
                     /db_xref="CDD:333710"
     misc_feature    order(376..393,406..408,433..435)
                     /gene="LOC100178192"
                     /note="phosphatidylinositol 3-phosphate binding site
                     [chemical binding]; other site"
                     /db_xref="CDD:277249"
     misc_feature    1216..1353
                     /gene="LOC100178192"
                     /note="RING finger, HC subclass, found in caspases-8 and
                     -10-associated RING finger protein CARP-1, CARP-2 and
                     similar proteins; Region: RING-HC_CARP; cd16500"
                     /db_xref="CDD:438163"
ORIGIN      

gtttatttcacaatactaaacactgttagacgcgttctgtttttagtgaacaacactcgttgtttgttaatgtaaaaggagatgaaataagtcattacttaaggtgtattacgtaaaatttatcactgctttattgttttaacagttaatattgtgttaggcaaaaacatttgatttagatgttttaaaaacggtcggaaaagtgtaaaaaattaagacaatgttggatgcattttgaagttcatttataaagtattttgtacctgagaaaaaagacattatacgaaatatttattaacaattttaaccattgcgtgtaaatcgcgccgcagtatgccttgtgcgtgctgttctgcacaattctccattttaaagtggaagtcaagatgctcaaactgttttcaactattttgctctgactgtagcatcggcagagaatgcaggccgtgttgctatgtcaacaggtgtaaatcctcaaagacaagcttgatgcaaatcaaggtgaaagacctacaggggtatcttaagaactttaaaattgagcacagaacatgcaaagagaagcacgagttggttaaactgatacagaatcaattcggcatcacatcaagtgagaatatccaaccaccaagttcatatactacccatgacaatagggccaatgaagatcaaagaagagatgacaattctgaccagaatcaaagtgaaaactcaagcaccgacgacccagctgtgcatctgccaactccccccacataccaaaggacacaggagtcttttcctacagcagaacaattcaatgtgtcaagttcaggcaatgatagttcaatagccacaccgatagtgattgaggacactgaagaatcaacgtcaacacataataacgcaaatacagtagaaaataatgaagtaactgaagaaacaagcacctcttatgcattctcatcaccagcagttgaaagaacagcaaaaaagactaaaatcgggctttctgagattaaatctgttcaagaaattgagtcttactcaattaaacagcttaaaaccttgcttcaagaaaacttagttaattataaaggggtcttggagcgcacagagttggtgaacagggtaaaaaacttgtatgaagaccatgtgtctaatgagagcaatatcagtgatgatattactgaggaaaacagctcatcatatgttacaaataaagatgaattattctgtaaaatatgctgggaaagacctagagactgtgtactcctggagtgtgcacatatgagcacttgtattacttgtggaaagcaattaagagaatgtccaatttgtagacaacatatagtacgcgcagtacgggtgttcaaatcttaacttcaaatacgaggggtttttaattaagattaatttcgatttttttttcgattgaaaattaagctttcaagtcttgaactgagttaagaattgaactatctatgcagaataaatgacactagctactaactagttgcattgtagtagatcacgcaatcttgttgttgtagcttgtaggggtactaatggggttctaaatcccagtttccatgacgtgcctcactgtataacctcacccatatagaatagaatgtgcatatacgctgttggggtaatgggtcaactctggcttaaatccaggtcccatggcatgcctcactgtaggacctcacccatatagaatagaatgtaataccaaacgccacctaggttcaatttatggagtgtattttaaataattttcttcactactaaatgcaaaagttacaaatatgttaaaatatattatattttaaaagtaattctactaaaaataccttttactttttcctgcagctgcaattattcaatttccgtttcatttaaaactgatttttcgctgatagattttagatatgtaaaacatattctatctatgctattatagctttaattttagcaaaaatatataaacatatgctcacccatttttattgaacagctgaagttccaattctctaataacagcttttaaatggaaaaaattactttatttaaattggtgcttttaacgatgtcaacattttctaaaccttacatttctatttaattgctgacaatttttcgcagttttattgcaaatgccaaaccttggatgatttgtgtttcaacttttcaatgtaataaaataacttttacccttc

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