2024-04-26 23:29:17, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_002121035 3019 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox-containing protein 1 (LOC778606), transcript variant X2, mRNA. ACCESSION XM_002121035 VERSION XM_002121035.2 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020166.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Oct 21, 2016 this sequence version replaced XM_002121035.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3019 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="1" gene 1..3019 /gene="LOC778606" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 8 ESTs, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 95 samples with support for all annotated introns" /db_xref="GeneID:778606" CDS 52..1623 /gene="LOC778606" /codon_start=1 /product="homeobox-containing protein 1 isoform X2" /protein_id="XP_002121071.1" /db_xref="GeneID:778606" /translation="
MRDTRLSPHPEEMGEPDPPKFTVNQILLLQKLKQSGLTKSQIIKGLDEMERFDDVGLGSPGASVSSSTQQVPNGNSPSSVGSTNSGNTVTSCANAGARRNSTSPQSPHLPVKTNTVIPHPQPIPNHLMFGAHMQNASQLSLIPPVAAWPNTSQAVAVATAASILQNGFAHGNVPHSVYPSLINGRGLLQRGPAMSGTGSTVVEVDGEKIDITEELEDLFRRDQASVKEDIRKFISERHISQSAIAKATRNAISQSYISQWLAQPQDISGQKKKAMYTWYIVERRKPPGLTNGMSSVPPVVFRHNEIENDCISPMMMKSKRGARFTWPKECLSILENYYNANSYPDECKREEIAHACNAIIQSQKPGSMLTELDKVTTVKVYNWFANRRKDDKRRRHIEHVEAMDQHHLIMSPRRNSATSPSPSCHSNDSSQGVESNERNYSSFPLPIPPQCMVIPKKENPMQLALEMAAVNHSIMALVNPHQVDDPMREDEEDDLGESSSEEIQRPEERRPFERLPDNRSYAG"
misc_feature 124..891 /gene="LOC778606" /note="Hepatocyte nuclear factor 1 (HNF-1), N-terminus; Region: HNF-1_N; pfam04814" /db_xref="CDD:428137" misc_feature 1009..1209 /gene="LOC778606" /note="Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner; Region: homeodomain; cd00086" /db_xref="CDD:238039" misc_feature order(1015..1017,1024..1026,1195..1197,1204..1209) /gene="LOC778606" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" ORIGIN
attagatttaaaaaccgtgcaacataaaactgaaccttaagtttcgactgaatgcgcgacactagactctcgccccatcccgaagaaatgggggaaccggacccccccaagttcacagtcaaccagatccttctcctgcaaaagttaaagcaaagtggtctcaccaagtcgcagattataaaaggacttgatgagatggaaagattcgatgatgtgggactcgggagcccaggagcaagcgtatcatcatccactcagcaagtaccgaacggcaattcccctagcagtgtagggtcgactaacagtggcaatacagtgacatcatgtgctaacgctggagcacgacgcaacagcacaagtcctcagtcgccccatttaccagtaaagacgaatacagtgattcctcatccccagcctatccccaaccatttgatgtttggagctcatatgcagaatgcaagccagctctcgcttataccgcctgttgctgcgtggccaaatacgtcacaagccgttgccgtagcaacagcagccagtatcctgcaaaacggttttgctcacgggaatgtccctcattctgtgtatccgagccttatcaacggcagaggacttcttcaaagaggacccgcgatgtcgggaacagggagcacagtcgtagaagtggatggtgagaagattgacatcacagaggagcttgaagatctcttccgacgggatcaagcttccgttaaagaggacatccgaaaatttatcagcgaacgtcacatttcccaatccgcaatcgcaaaagcgacaagaaatgctatcagccaaagctacatctcacaatggttagcccaaccccaagatatcagcgggcagaagaagaaagccatgtacacttggtacatcgtggaacgtagaaaaccaccaggccttactaacggcatgagctcggtcccccctgtagtgtttcgtcacaacgagattgagaatgattgcataagccctatgatgatgaagtcgaaacgaggagcaaggttcacctggccaaaggaatgcctgtcaatacttgagaattattacaacgcaaactcctatcctgatgaatgtaaacgtgaggagatagcacatgcttgcaatgcgatcatacaaagtcaaaaaccaggcagcatgcttacagaactggacaaagtgaccactgttaaagtttataattggtttgcaaaccgacgcaaagacgataaacgtcgtcgtcacatagaacacgtggaggcaatggaccaacaccatctcattatgagccctcgtcgtaactcggccacttcaccttccccatcttgtcattcaaacgacagctcacaaggggttgaaagcaacgaacgcaactacagctcattcccactacctatccccccacagtgcatggtgatacccaagaaagaaaatcctatgcagctagcacttgaaatggcggctgttaaccattcaatcatggcgctcgtcaacccgcatcaggtcgacgatccgatgcgagaagacgaggaagacgaccttggagaatcttcctcggaggaaatccaacgaccagaggagcgtagaccgtttgaacgcttaccggacaaccgaagctacgccggctgagtctttccaaactccccgtttaattccgatctcttgcgccaccgatggagcatgcttcgccttgcccgccgtcgagctgtccccccctccttgccttcagcgctatttatgttcagtattccaatattattgcgaaatacgaacctttaaagtcgtcttacgactcgttccacgccttagtttctcgccctgccttgcgcggcgtcggtcgctttttttcgtcccctatcggtgctaggggtgtctgttttccttattgcgctctaaccaacgtaaactgtgccattctacatgtccgctataaaacagtatacaacacaacctaaatgcaggtaattttccaacttaagcaaacgataacatttcctatagtaaccggttccaaatacccggccatctccaccatataaagtattcctttacctttttcacccccaaagcaaagggttcgttccttctctatatagtactgactcgcccgagcttgttcgttttattctttctttcttttaccttatacgcgtcgcggacgagcgttttttcaaataccccccagcagtgttagcttattgttctgtcctctttgcacgtccgtatttcccgttttccgaggcccgctaacgcagtaatgttgcccacacacatataaacggcttcgaatactccattttcgtctaacgatttataacaatttctccatataaaactacccaaagctagactgcaacgtaacagcacccagacagcccaatagcagtgctacccacaacatatctgtattctccactgttaaaaaagaccccagcgcttgacttttcacgaggcttctccgccactgccaagtgcttttttggtattctgactgctcccgctgggtcacgaacccggaactcctgttcctgcaaaccagtttcacgttcagtattgtgtccgccttttttatcgcacttacagaacttaaatttcggcaataacgtgtgtaaatattgttcctatccttatacacgctgtggactttgcagcgctggcgttttattttattttattctatcctatacattatcccataggcgccaaacctggggtttcaggctaggcaggcctgccgtgaaattttttcctctaaattaatcagtaaacattaaaacaaaaatcgttttgagaaattcgcatccagcaatttctgccttccctgcagtttcaaaactttggcgcctatacattatctatatattcaatatatgtatttaaatttttgtcgctgatgccctccttaacggtttggtgctgaagtcacgtgcatgctgtaccattgtgacgtcgatacatgtgacgtgtttctttttacaatcaagcccgaatgatgtaaattaaataaacggcattaccgttgtaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]