2024-03-29 08:54:52, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_002119507 1491 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis homeobox protein SIX6 (LOC778753), mRNA. ACCESSION XM_002119507 VERSION XM_002119507.4 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020175.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Oct 22, 2018 this sequence version replaced XM_002119507.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1491 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="10" gene 1..1491 /gene="LOC778753" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 3 ESTs, 32 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 60 samples with support for all annotated introns" /db_xref="GeneID:778753" CDS 111..1367 /gene="LOC778753" /codon_start=1 /product="homeobox protein SIX6" /protein_id="XP_002119543.3" /db_xref="GeneID:778753" /translation="
MLSEGMLRAGGDMAETVAQRASSPIVMSSQSSLSPSSSIAKLFSGAANSRSMFGGMGSNPRPDIVAAAAALRHMINQNLLQQPASQSPNPLLPFPALTFSPSQIATVCESLQESGDIERLARFLWSLPAAPGVLEVLNTNEVVLRARAIVAFHQGHYRDLYAILETHRFTEKDSHGKLQAMWLEAHYQEAAKLRGRPLGPVDKYRIRKKFPLPRTIWDGEQKTHCFKERTRSLLREWYLRDPYPNPSKKKELAHATGLTPTQVGNWFKNRRQRDRAAAAKNNRQQNQLSPQPRSKTTSPTSYQNELLRHYGTHNDPSAMFWAVGKFPGFPMTVPHFQRPTYIDKGDSPTGSTFSSPSFLPTPPMTSLHRLNTSSPKAESDSGSVSPISSHYDKRIESDDITNEDNFPEADTASQSPKD"
misc_feature 405..749 /gene="LOC778753" /note="Transcriptional regulator, SIX1, N-terminal SD domain; Region: SIX1_SD; pfam16878" /db_xref="CDD:435624" misc_feature 771..917 /gene="LOC778753" /note="Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner; Region: homeodomain; cd00086" /db_xref="CDD:238039" misc_feature order(774..776,783..785,903..905,912..917) /gene="LOC778753" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" ORIGIN
cagggattaaaaggagagaaagaaagaaaaaggtgatcctggaagtacatgaacatcgcagcgcgttccaaagcattcaattcatctgcagcgaacgatacagaatatcaatgttgagtgaaggtatgttacgtgctggcggcgatatggcggagactgttgcccagcgcgcctcttcgcctatagttatgtcttcacagagctcactgtctccgagttctagcatagcaaaacttttcagcggagcagctaactcaagaagcatgttcggggggatgggttcgaaccctagaccggacatcgtagcagcggccgcagcgttaaggcatatgatcaaccaaaatctgcttcagcaaccggcaagccaatcacccaaccctttgctacctttcccggctctcactttcagcccctcgcaaatcgcaacagtttgtgaaagtttgcaagaaagcggtgatattgagaggttagcccgattcctgtggtcacttccagcagctcctggagtcttggaggttttaaacaccaacgaggtggttctaagagcgcgggcaattgttgcgtttcaccagggccattatagagacttgtacgccattttggaaacgcatcgattcactgaaaaggactcccatggaaagttacaggcaatgtggcttgaagctcattaccaagaagctgctaaactaagaggaaggcccttaggcccggtagataaatacagaatccgaaagaaatttcctttgccgaggacaatttgggacggggagcaaaaaacacattgttttaaggaacgaacccgaagcctgttacgtgaatggtacctacgtgacccttaccctaacccaagcaagaagaaagagcttgctcatgcaacaggacttacaccaactcaagttggaaattggttcaaaaacagaaggcaacgagacagagctgctgccgcaaagaacaatcgtcaacagaaccagttaagcccacaacctagaagcaaaaccacctctcctacgtcataccaaaacgaattgttacgtcactatggcacccacaacgacccatcagcaatgttttgggcagtgggtaaattcccaggtttccccatgacagtaccccatttccaacgacccacctatatcgataaaggggattcaccaaccggaagcactttctcttccccttctttccttccaacccctccgatgacgtcattgcaccgactcaatacgtcatcaccgaaagcggaaagcgactccggttcggtgtctccaatctctagtcattatgacaaaagaatagaaagtgatgacataacaaacgaagacaatttcccggaagcagacacagcgagtcagagcccgaaagactaaagttttaaaaactgttttcttggtcatgagactcgccgtacattcttgcactcgttattattattgctcgtgtatcgtgtcggtatattacatttcatttcgattaaaaacctgttatatataa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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