2024-05-03 06:48:38, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_002119305 1544 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis transmembrane protein 47-like (LOC100183468), mRNA. ACCESSION XM_002119305 VERSION XM_002119305.4 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020169.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Oct 22, 2018 this sequence version replaced XM_002119305.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1544 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="4" gene 1..1544 /gene="LOC100183468" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 56 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 168 samples with support for all annotated introns" /db_xref="GeneID:100183468" CDS 186..782 /gene="LOC100183468" /codon_start=1 /product="transmembrane protein 47-like" /protein_id="XP_002119341.1" /db_xref="GeneID:100183468" /translation="
MGKEVIIEISWLRPLKLIGLANLLCGIIVFIIAMILEDWVVSDENENFQFYMSLWKKCKKIPPPEVEREEGVEAEWECLEATALGVYMSVVQALIVIPFVASIISFIIGIVAYCKREWRFLYKIAAIILIIAAVAVLVGVILFPIMFINNLPFSAFFWFGWGYGVSWAAFCFILCAAVLFLISQDKKEIYHTQKTMKL"
misc_feature 255..728 /gene="LOC100183468" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN
ttactataactgtagtggtcctgcagtagtttgggcagcggttgaacgtaaagataaatacccatactactgctttataaagtaagcatatattagcgaccactcatgcgtagagtataaaattagttttttgttacacagatatgttagtctaaggtttatagctgcttgttaaggtgaccgcaatggggaaagaggttattatagaaatatcgtggcttcggccgttaaaacttattggactggcaaacttgctctgcgggatcattgtgtttataattgcgatgatacttgaggattgggttgtcagcgatgagaatgaaaactttcaattttacatgagcctgtggaagaaatgcaagaaaatcccaccgccagaggtcgaaagagaggaaggcgttgaagcggaatgggaatgcctagaagcaactgcgcttggtgtttacatgtctgtggtacaagcattgatcgtgataccatttgttgcttctattatttcctttatcattggtattgtggcgtattgcaagcgcgaatggagatttttgtacaagattgctgcaatcatccttataattgctgctgtggctgtccttgttggagtaatcctatttccaatcatgttcatcaataatcttccgttctccgcattcttttggtttgggtggggttatggtgtctcgtgggcggctttctgtttcatactatgtgcggccgtgctcttccttataagccaagacaaaaaggaaatttaccacacacagaaaaccatgaaattataaatatagtatgaagtggagaaaaatgggacacattttaattctaatttcttgtctcgttttgtagtaaacaaagaacattcaaagaattataaaaccttatcctcgcgactcccatagaccgttgttaattgtttaaaacacgatcagatatttttatattatatgctaagggtgtcctatcttaccccacggaattgtacatggcatcaccgatgcctttgactgcttgcatgacggaggtggcaaaatacgactttcagcatatgaaaaacatagaacgccgctcacttattttgtatttgcttttaattaattaaaccgtccccattgtatataccgttacgatcttaattggttttcacattcgaactgctaggaaatgtttaaatgttttaaaggccatgatatgtacatgtgtgtatacgaaaaactaacaataacagccagcctgtctaaagttccaagaaaatgtagaacaatttaaattatttggtctcgtttaaccccagcgtgaatgaacttcttatctttgtgtatttgttctaattagctgatgaattttcattagtcgccatataaagtgtggacaaagacatttgttttactgatgaatggccggtgtttggacgctgtgagagaagctctaattaatttaactctttcatcgtttcgctttacgcccgttagtaagcgacccatttcagcacaacagtaataaagtaataaattgaccgctttcaataaacggtcctaaagcgtgtg
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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