LOCUS       NM_001161490            1085 bp    mRNA    linear   INV 04-MAY-2019
DEFINITION  Ciona intestinalis radial spoke protein Ci-RSP9 (ci-rsp9), mRNA.
ACCESSION   NM_001161490 XM_002126527
VERSION     NM_001161490.1
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
REFERENCE   1  (bases 1 to 1085)
  AUTHORS   Satouh Y and Inaba K.
  TITLE     Proteomic characterization of sperm radial spokes identifies a
            novel spoke protein with an ubiquitin domain
  JOURNAL   FEBS Lett. 583 (13), 2201-2207 (2009)
   PUBMED   19527718
REFERENCE   2  (bases 1 to 1085)
  AUTHORS   Satou Y, Yamada L, Mochizuki Y, Takatori N, Kawashima T, Sasaki A,
            Hamaguchi M, Awazu S, Yagi K, Sasakura Y, Nakayama A, Ishikawa H,
            Inaba K and Satoh N.
  TITLE     A cDNA resource from the basal chordate Ciona intestinalis
  JOURNAL   Genesis 33 (4), 153-154 (2002)
   PUBMED   12203911
COMMENT     PREDICTED REFSEQ: This record has not been reviewed and the
            function is unknown. The reference sequence was derived from
            AB501300.1.
            
            On Jun 6, 2009 this sequence version replaced XM_002126527.1.
            
            ##Evidence-Data-START##
            CDS exon combination :: AK117017.1 [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMD00028098, SAMD00028101 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1085
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
     gene            1..1085
                     /gene="ci-rsp9"
                     /note="radial spoke protein Ci-RSP9"
                     /db_xref="GeneID:100179789"
     exon            1..103
                     /gene="ci-rsp9"
                     /inference="alignment:Splign:2.1.0"
     exon            104..368
                     /gene="ci-rsp9"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    121..123
                     /gene="ci-rsp9"
                     /note="upstream in-frame stop codon"
     CDS             142..972
                     /gene="ci-rsp9"
                     /codon_start=1
                     /product="uncharacterized protein LOC100179789"
                     /protein_id="NP_001154962.1"
                     /db_xref="GeneID:100179789"
                     /translation="

MDANGLHLNVDHVAGSGVILSPEQKAALQTSLIILKTHYKFNNVVLWGKILGIKDDYFIAQGSGKDELKDRKSLYSLNCIEWHLLPPATSEMKNKATMVRGRLMGDPSFEYEHTDVRRVRDGEEYTEEEVTIQIKEEDRVSAIVATIDEEASIVPRGAFIKTPLGQVYNNRSFEGLSVAECGKLSSFMHFREAQNFGNKSIKEKADLNPSIDFLDSIEDDIPKGSWSSQFERGSGLVCLRSLVWLGMTFYHVPNTTRFGCMYVGTGEKNFDIPFML"

     misc_feature    <190..948
                     /gene="ci-rsp9"
                     /note="Radial spokehead-like protein; Region:
                     Radial_spoke; pfam04712"
                     /db_xref="CDD:428080"
     exon            369..534
                     /gene="ci-rsp9"
                     /inference="alignment:Splign:2.1.0"
     exon            535..664
                     /gene="ci-rsp9"
                     /inference="alignment:Splign:2.1.0"
     exon            665..811
                     /gene="ci-rsp9"
                     /inference="alignment:Splign:2.1.0"
     exon            812..1085
                     /gene="ci-rsp9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agttgttgagtttgcgatagttctaaaggtttttaatattgctagcatgtagtttatatccttgccggtataaagtaattaataaaaactaattttcaattaaatttcctttgtaccaaatagacttgcttaagatccaccatggatgccaatggacttcatttgaatgttgaccacgttgctggcagtggagtaattctcagtccggagcaaaaagcagctcttcaaacatctttgattatcctgaagactcactacaagttcaacaatgttgttctgtggggaaagattcttggaataaaggatgattattttattgcacagggatcaggaaaagatgaactaaaagatcggaaatcattgtacagtttaaactgcatcgaatggcatcttcttcctccagcaacatctgagatgaagaacaaagcaacgatggttcgtggaagattgatgggcgatccctcgttcgaatacgagcacacggatgtcaggagagtccgggatggggaggagtacactgaggaagaagtcacaattcaaataaaagaagaagacagagtttcagcgatcgttgcaacgatcgacgaagaagcgagcatcgttcctcgtggagcgttcattaaaactccacttggtcaagtttacaacaacagaagtttcgaaggtttatcagtagcagaatgcggaaagctgtcgtcattcatgcatttccgggaagctcaaaactttggcaataaatcaatcaaagaaaaggccgacctcaatccatcaattgattttctcgacagcattgaagatgatattccaaaaggatcgtggagctcccagtttgaacgaggcagtggattggtttgtctacgaagcttagtttggttgggaatgacattctaccatgttccaaatacaactaggtttggttgtatgtacgtgggcactggggagaaaaatttcgacattccttttatgttgtagagtttctggtttctattaaatgctgttgtataatagattgtatgtactgttgtttgtttttctttgaaaagatattattttcaagagtattgttgcttgttattttcatgaat

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