LOCUS       NM_001128878            1256 bp    mRNA    linear   INV 04-MAY-2019
DEFINITION  Ciona intestinalis homeobox transcription factor, LAG1-like 4
            (LOC100169897), mRNA.
ACCESSION   NM_001128878
VERSION     NM_001128878.1
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
REFERENCE   1  (bases 1 to 1256)
  AUTHORS   Imai KS, Hino K, Yagi K, Satoh N and Satou Y.
  TITLE     Gene expression profiles of transcription factors and signaling
            molecules in the ascidian embryo: towards a comprehensive
            understanding of gene networks
  JOURNAL   Development 131 (16), 4047-4058 (2004)
   PUBMED   15269171
REFERENCE   2  (bases 1 to 1256)
  AUTHORS   Satou Y and Satoh N.
  TITLE     Genomewide surveys of developmentally relevant genes in Ciona
            intestinalis
  JOURNAL   Dev. Genes Evol. 213 (5-6), 211-212 (2003)
   PUBMED   12736827
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AB210524.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB210524.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1256
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
     gene            1..1256
                     /gene="LOC100169897"
                     /note="homeobox transcription factor, LAG1-like 4"
                     /db_xref="GeneID:100169897"
     exon            1..1236
                     /gene="LOC100169897"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    32..34
                     /gene="LOC100169897"
                     /note="upstream in-frame stop codon"
     CDS             38..1078
                     /gene="LOC100169897"
                     /note="Ci-LAG1-like 4"
                     /codon_start=1
                     /product="homeobox transcription factor, LAG1-like 4"
                     /protein_id="NP_001122350.1"
                     /db_xref="GeneID:100169897"
                     /translation="

MEALSQWFWNDWFWLPRGTSFASLRETEGRYAQPRDLVALLIWGGIICVIRKVFELCLNERIAKMMGVKNKREKPKHVPILEAHFTVTSQPSDSKIAELAKKVDTSQREVERWFRKRRNFEKPDMVKKLGEAAWRFVFYLFIFAFGGVTLYDAPWLWDTEHCWIGYPQTIWPSVYYYYMFEGGFYISLLLTVTTDVRRKDFYEQIIHHIATIALISFSYISNFVRIGSLILIIHDSADVFLELAKCFMYAKKDKWADRFFALFVTSFLFTRLFLYPVFALYPSFVKLRRRIDPWPAYIIMTCFATILQGLHVFWSYLIIKMAVRVLVTGKKAKDSRSDDEDESDVE"

     misc_feature    260..391
                     /gene="LOC100169897"
                     /note="Homeodomain; DNA binding domains involved in the
                     transcriptional regulation of key eukaryotic developmental
                     processes; may bind to DNA as monomers or as homo- and/or
                     heterodimers, in a sequence-specific manner; Region:
                     homeodomain; cd00086"
                     /db_xref="CDD:238039"
     misc_feature    419..997
                     /gene="LOC100169897"
                     /note="TLC domain; Region: TRAM_LAG1_CLN8; pfam03798"
                     /db_xref="CDD:427511"
ORIGIN      

agatttttgaaacaaatagcattatctaagctaagcgatggaagccttatctcagtggttttggaacgactggttttggttaccacgtggtacaagtttcgcgagtttacgcgaaacagaaggacgatacgcccaaccacgtgacctggtggccctccttatttggggaggaataatttgtgtcatcaggaaagttttcgagctttgtttaaatgaaagaatcgctaaaatgatgggtgtaaagaacaagcgggaaaaaccgaaacacgtgcccattctggaagctcatttcactgtgacgtcacaaccgagtgattctaaaatcgcggagttggcaaagaaggttgatacgtcacaaagggaagttgaacgatggtttcggaagcgacgaaacttcgagaagccggatatggttaagaagttgggtgaagctgcgtggaggttcgtgttctacttgttcatcttcgcgtttggcggagtaacactgtacgatgcaccatggttgtgggatacagagcattgctggattggttatccacaaactatatggccgtctgtatattattactacatgtttgagggtggtttctatatctcattgttactgactgttactacagatgtaagaagaaaagacttttatgaacagataatccaccatatcgctacaatagctttaatttcattctcctatatttcaaacttcgtccgcatcggttccctaatattaatcatccacgattctgccgatgttttccttgaactcgccaaatgcttcatgtacgccaagaaagataaatgggccgatagattttttgctttgtttgtgacatcattcttgtttacccgtttgttcctctaccccgtgtttgcgctgtatccttcatttgtgaaactgcgtcgccgcatcgacccgtggcccgcttatatcataatgacatgctttgccactatactacaaggtctccatgtgttctggtcgtacttgataatcaagatggcggttcgcgtcctcgtcaccgggaaaaaggcgaaagactcgagaagtgatgacgaagatgagagtgacgtggaataaaacttcactgttacgtcactccctgccttgatacgtcacggtttgtttttaatacatcactgtgacgtcacagaagagtgacgtgggtaacttgcataggaataaaaatcgttaattttatgtcgttcaaaaattacaataaaaaatatttgttcttcaaaaaaaaaaaaaaaaaaaa

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