LOCUS       NM_001078350            1113 bp    mRNA    linear   INV 04-MAY-2019
DEFINITION  Ciona intestinalis transcription factor protein (LOC778757), mRNA.
ACCESSION   NM_001078350
VERSION     NM_001078350.2
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
REFERENCE   1  (bases 1 to 1113)
  AUTHORS   Satou Y, Kawashima T, Shoguchi E, Nakayama A and Satoh N.
  TITLE     An integrated database of the ascidian, Ciona intestinalis: towards
            functional genomics
  JOURNAL   Zool. Sci. 22 (8), 837-843 (2005)
   PUBMED   16141696
REFERENCE   2  (bases 1 to 1113)
  AUTHORS   Imai KS, Hino K, Yagi K, Satoh N and Satou Y.
  TITLE     Gene expression profiles of transcription factors and signaling
            molecules in the ascidian embryo: towards a comprehensive
            understanding of gene networks
  JOURNAL   Development 131 (16), 4047-4058 (2004)
   PUBMED   15269171
REFERENCE   3  (bases 1 to 1113)
  AUTHORS   Satou Y and Satoh N.
  TITLE     Genomewide surveys of developmentally relevant genes in Ciona
            intestinalis
  JOURNAL   Dev. Genes Evol. 213 (5-6), 211-212 (2003)
   PUBMED   12736827
REFERENCE   4  (bases 1 to 1113)
  AUTHORS   Satou Y, Yamada L, Mochizuki Y, Takatori N, Kawashima T, Sasaki A,
            Hamaguchi M, Awazu S, Yagi K, Sasakura Y, Nakayama A, Ishikawa H,
            Inaba K and Satoh N.
  TITLE     A cDNA resource from the basal chordate Ciona intestinalis
  JOURNAL   Genesis 33 (4), 153-154 (2002)
   PUBMED   12203911
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AB210690.1.
            
            On Aug 31, 2012 this sequence version replaced NM_001078350.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB210690.1, FF894199.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00013799, SAMD00028078
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1113              AB210690.1         2-1114
FEATURES             Location/Qualifiers
     source          1..1113
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="12"
                     /map="12"
     gene            1..1113
                     /gene="LOC778757"
                     /note="transcription factor protein"
                     /db_xref="GeneID:778757"
     exon            1..190
                     /gene="LOC778757"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    29..31
                     /gene="LOC778757"
                     /note="upstream in-frame stop codon"
     CDS             50..535
                     /gene="LOC778757"
                     /codon_start=1
                     /product="transcription factor protein"
                     /protein_id="NP_001071818.1"
                     /db_xref="GeneID:778757"
                     /translation="

MTDDKKEKYFSQQSKIQSGQSVIFSDEELLNLSVRDLNRHLRSLSPEESRRLKQRRRTLKNRGYAASCRIKRLTQKDELDIERIQLQNEVDRVTQENQRMKLELEAFQKKFHDLEQFAKSIGKGNSSYTGDGNVPTLLQVMRPPTTQQNGDSANTESNMIS"

     misc_feature    185..394
                     /gene="LOC778757"
                     /note="Basic leucine zipper (bZIP) domain of small
                     musculoaponeurotic fibrosarcoma (Maf) proteins: a
                     DNA-binding and dimerization domain; Region:
                     bZIP_Maf_small; cd14717"
                     /db_xref="CDD:269865"
     misc_feature    185..394
                     /gene="LOC778757"
                     /note="coiled coil [structural motif]; Region: coiled
                     coil"
                     /db_xref="CDD:269865"
     misc_feature    order(215..223,227..235,239..244,251..256,260..265)
                     /gene="LOC778757"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:269865"
     misc_feature    order(263..265,272..277,284..289,293..298,305..310,
                     314..319,326..328,335..340,347..349,356..361,368..373)
                     /gene="LOC778757"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:269865"
     exon            191..316
                     /gene="LOC778757"
                     /inference="alignment:Splign:2.1.0"
     exon            317..439
                     /gene="LOC778757"
                     /inference="alignment:Splign:2.1.0"
     exon            440..1092
                     /gene="LOC778757"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

taagactttgtaaactatatatttagtttagctgattgacgatattgatatgactgacgataagaaggaaaagtacttttcgcaacaaagcaagatacagagtggacagtccgttatattctctgatgaagaactattaaatttgagcgtacgtgatctaaaccgtcacttacgaagtttgtctccagaggaaagcagacgcttaaaacaacgaaggcggacattgaagaaccgtggttatgcagcttcatgtcgtattaaacgcctcacacagaaggatgaacttgatatagagagaatccaacttcagaacgaagtggatagggttacacaggaaaatcaaagaatgaagctggagctagaagctttccaaaagaaattccatgatttagaacaatttgctaaaagtatcgggaagggcaattcatcttacactggtgatggtaacgtcccaaccctattgcaagtcatgcgcccaccgacgactcagcaaaatggtgactcggcaaatactgaatcaaacatgatcagttaacatagctaaccacaacattcggtttctcaatattaatcgacacttgttgacatgttacgttgctactatgtttcctaaatatcatgataatgttgtatatatggtatcgttttcgccattgcgtttgccgcaattcagtcacagcaatgcttcctactgcatgcagaacaaactaacacacacgagttagtaatagatattttattcacctatgactcaaaacatgggaaaaattgcaatgcaaatattttaatcactaaaaaataacactgcacatggacctagaggttaaaaccaaaatacgaggtagatataccacctttctagggtgcggcagctctcctatgcttcccaagtcttggttgaatccgcaattcagagcaatctgttcacaaataagtataataatcaaaatactaaattagaaaattgtctatacctggtttaatatcatctatcaatggttttggttgggacaccgttttttgttgaagaaaactcataaaaccagcttccaattttacatcgctgtaaaaataaaataagaaattaataaaaaaaaaaaaaaaaaaaaaaaa

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