LOCUS       NM_001048000            3957 bp    mRNA    linear   INV 04-MAY-2019
DEFINITION  Ciona intestinalis transcription factor ATBF (atbf), mRNA.
ACCESSION   NM_001048000
VERSION     NM_001048000.1
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
REFERENCE   1  (bases 1 to 3957)
  AUTHORS   Miwata K, Chiba T, Horii R, Yamada L, Kubo A, Miyamura D, Satoh N
            and Satou Y.
  TITLE     Systematic analysis of embryonic expression profiles of zinc finger
            genes in Ciona intestinalis
  JOURNAL   Dev. Biol. 292 (2), 546-554 (2006)
   PUBMED   16519883
REFERENCE   2  (bases 1 to 3957)
  AUTHORS   Imai KS, Hino K, Yagi K, Satoh N and Satou Y.
  TITLE     Gene expression profiles of transcription factors and signaling
            molecules in the ascidian embryo: towards a comprehensive
            understanding of gene networks
  JOURNAL   Development 131 (16), 4047-4058 (2004)
   PUBMED   15269171
REFERENCE   3  (bases 1 to 3957)
  AUTHORS   Satou Y and Satoh N.
  TITLE     Genomewide surveys of developmentally relevant genes in Ciona
            intestinalis
  JOURNAL   Dev. Genes Evol. 213 (5-6), 211-212 (2003)
   PUBMED   12736827
REFERENCE   4  (bases 1 to 3957)
  AUTHORS   Satou Y, Yamada L, Mochizuki Y, Takatori N, Kawashima T, Sasaki A,
            Hamaguchi M, Awazu S, Yagi K, Sasakura Y, Nakayama A, Ishikawa H,
            Inaba K and Satoh N.
  TITLE     A cDNA resource from the basal chordate Ciona intestinalis
  JOURNAL   Genesis 33 (4), 153-154 (2002)
   PUBMED   12203911
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BR000115.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BR000115.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..3957
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="3"
                     /map="3"
     gene            1..3957
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /note="transcription factor ATBF"
                     /db_xref="GeneID:751576"
     exon            1..282
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    92..94
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /note="upstream in-frame stop codon"
     CDS             95..3109
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /codon_start=1
                     /product="transcription factor ATBF"
                     /protein_id="NP_001041465.1"
                     /db_xref="GeneID:751576"
                     /translation="

MTWHPKLHCHRKLSSIGSGTLCSRSDSGPRTHHTTSASHLCLVWRMLIGHNLRSRRPQLKIPQRTPRTRFTDFQLQVLQEFFDKNAYPKDDDLDKLSKTLDLSTRVIVVWFQNARQKARKNFEQSQQPHVNISPGQPIQATSYRPVSPVVEEAIAKARLLTQGSKTDLDNFVRKSMNEVGKNIQPKDKQSPSLQESFKTSTRTPSNDSNPQSHSRTSSNTENKEKSNFPCQVCDLSFATIPQWQAHQQVHLAANVASVFGQYGFMYMQGLMGDEQKTEDKKVEEKSVSDSWSNNTDKLGWNGQQPWMKHSIEQKLPNQARTISDDKASTIRSRLVTPPMGGAKRKISTSPTLSHSSSSSTSPSMVQNSMMRQKGAYMDERDSLGKDPKRLRTTITPEQLEYLYQQYLVDSSPSRKIIEQISEAVGLKKRVVQVWFQNTRARERKGQFRSSVARCSSGQVQYKFCQLCRMVFRSKIELDTHMQVRHNEHSSKDEPADKKMRLAIGSPQLSQSPAINRDTVQQDYRKFDNSRSSSDQGNKSMHSMHENAPSPMRLQNQTQKPKQENNFLKESNYNADTARTNHINSLKQLFGGANANTPSTLDLQQKLAALYASRKEVYQSIDPSPLLALQLPTSSTETNQQIVPRSSENISTPPPVNSTSQKNTSNIAVSSKTGNEQSQDKSFQQDISATHQTSDTAAISPHSPTSKQKFLAYMNEGTYATPKRYRTQMTSVQVRALKSCFRSYKTPSLTECEVLGSEIGLPKRVIQVWFQNARAKEKKYKLQNPDCQDKYSDQSQLTECPTCFPIVRFSLAAEVREHAFSHIHLQQLMKGSDSGLSNEPRHSYNSSPSSSHGSFDNSYMADQPMSDTQHSEQFLFNHVQSSAAEPSSTSSLTPSSAEYSCAQTMSRLSSAESLNAADTAMHEASGSTTPDKEEADHSSEYTNALMSNPALLQQYQQAVQKMMTGGNEVINDADAQSMHQARLQAFQRSLYKMLNLPHTSAAGGR"

     misc_feature    order(284..298,302..304,353..355,371..373,410..412,
                     416..421,428..433,437..445,449..454)
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    290..451
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(290..292,299..301,419..421,428..433,440..442)
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    order(1256..1270,1274..1276,1325..1327,1343..1345,
                     1382..1384,1388..1393,1400..1405,1409..1417,1421..1426)
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(1262..1264,1271..1273,1391..1393,1400..1405,
                     1412..1414)
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    1265..1423
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(2258..2272,2276..2278,2327..2329,2345..2347,
                     2384..2386,2390..2395,2402..2407,2411..2419,2423..2428)
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(2264..2266,2273..2275,2393..2395,2402..2407,
                     2414..2416)
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    2267..2425
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     exon            283..1214
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /inference="alignment:Splign:2.1.0"
     exon            1215..1390
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /inference="alignment:Splign:2.1.0"
     exon            1391..1588
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /inference="alignment:Splign:2.1.0"
     exon            1589..1799
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /inference="alignment:Splign:2.1.0"
     exon            1800..2237
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /inference="alignment:Splign:2.1.0"
     exon            2238..2392
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /inference="alignment:Splign:2.1.0"
     exon            2393..2472
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /inference="alignment:Splign:2.1.0"
     exon            2473..2618
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /inference="alignment:Splign:2.1.0"
     exon            2619..2891
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /inference="alignment:Splign:2.1.0"
     exon            2892..2995
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /inference="alignment:Splign:2.1.0"
     exon            2996..3067
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /inference="alignment:Splign:2.1.0"
     exon            3068..3135
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /inference="alignment:Splign:2.1.0"
     exon            3136..3957
                     /gene="atbf"
                     /gene_synonym="Ci-ATBF"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

atcaaacgacctcgcactcgaatcacagatgagcagttgaaagttcttcgcgccaacttcgacataaataattccccgagcgagacacagatagatgacatggcatcccaaacttcactgccaccgaaagttatcaagcattggttccggaacactttgttcaaggagcgacagcggtccaaggactcaccatacaacttcagcatcccacctctgcttagtctggaggatgcttataggacacaacctgagaagcaggagaccacagctcaagattccacaaagaaccccaagaacacgattcactgacttccagctgcaggtactgcaagagttcttcgataagaacgcctacccaaaagatgatgatttagacaagctgtccaaaacacttgacctgagcactcgtgttattgttgtctggttccaaaacgctcgacaaaaagcaaggaagaactttgagcagagccagcagccacatgtaaatatatcaccaggacagccaatccaagccacatcgtaccgaccagtatcacctgttgtagaagaagcgatcgcaaaagctcgactcctgacccagggtagcaaaactgatttggacaattttgtaaggaaatcaatgaatgaagtcggaaaaaacattcaaccaaaagataagcaatctccaagcttacaagaatctttcaaaacttccacacgaacacctagcaatgacagcaacccacagagtcattctagaacttcatcaaacacagaaaacaaagaaaagtcaaactttccatgccaggtttgtgacttatcctttgctacaatcccacagtggcaagctcaccaacaagtccatctcgctgccaacgtcgcttcagtgttcgggcagtacggcttcatgtacatgcaaggattaatgggggatgagcagaaaaccgaagacaagaaggtggaagaaaaatctgtcagtgattcgtggtccaacaacacagataagttgggttggaatggccaacagccatggatgaaacatagtatcgaacagaagttgccaaatcaagcaagaacaatctcagacgacaaggcgagcactattcgttcgcgattggtcactccacccatgggaggagcaaagaggaaaatatcaacttctcccactctctctcactcctcctcttcctccacaagcccatccatggttcagaacagcatgatgcgacaaaaaggtgcgtatatggatgaacgggattcactgggtaaagacccaaaaagattgcgaacaacaattactccagaacaattggaatatctttaccaacagtaccttgtggattcgagtccaagtcgtaaaataatcgagcaaatatcggaagctgttggtttaaaaaagagagttgtacaggtttggttccaaaacactcgcgcccgggaaagaaaaggccaattccgttcgtctgtagcaagatgttcaagcgggcaggttcagtacaaattctgccaactttgtaggatggtgtttcgtagcaagattgagctggatactcacatgcaagtgcgacacaacgaacattcgtccaaggatgaacctgcggacaaaaaaatgcgtctcgctattggttccccccaactttctcaatctccagccataaacagagacacggttcaacaagattatagaaaattcgacaattctcgtagttctagcgaccaaggaaacaaatcaatgcacagcatgcatgaaaatgctccatcaccgatgcgcttgcaaaaccaaacacagaaaccaaaacaagaaaataatttcctgaaagaatccaattacaatgctgacacagctcgaacaaatcacatcaacagtttgaagcaattgtttggcggcgccaatgcgaacacgccatccactcttgatctgcaacaaaagctagctgcactttacgcatctagaaaagaagtttaccaatccatcgacccgagcccactacttgctctgcagttgccaacatcgagcaccgaaacaaaccagcaaattgttccacgatccagcgaaaatatttcaacaccacctccagttaactcaacatcccagaaaaacacatcaaatattgctgtttcatctaaaactggcaatgaacaaagccaggataaatctttccaacaggatatatcggctacccaccagacttctgacactgctgcaatttctcctcattcaccaaccagcaagcaaaagttccttgcttatatgaatgaaggcacctacgcgactccaaagagatatcgcacacagatgacatctgtacaagttcgagctctgaagagttgcttccgctcgtacaagacaccatcccttactgagtgtgaagtgctgggcagtgagattggattgcctaagcgagttattcaggtttggttccaaaacgcacgggccaaggaaaagaaatacaaactgcagaatccagattgccaagacaaatattctgaccagagtcaactaactgaatgtccaacatgcttcccaatcgtccgattttcgcttgctgcagaagtgagagagcacgccttctcacacatccacctacaacagctgatgaagggttccgactctggattaagcaatgaaccaagacacagttacaacagcagtcccagttcttctcatggtagtttcgataactcttacatggcagaccagccaatgagcgatacacaacactctgaacagtttctgttcaatcacgtccaaagcagcgccgcagaaccttccagtacgtcaagtctgacaccaagctctgctgaatacagctgtgcgcagacgatgagtcggctttcgagcgccgaaagcttaaacgccgcagatacagcgatgcatgaagcttcaggttcaacaacaccagataaagaagaagccgatcattcctctgaatacacaaatgctctgatgagcaacccagcgttgttgcagcaataccagcaagctgtccagaagatgatgactggcggcaatgaggttataaacgatgcagatgcccaaagcatgcaccaggcaagactacaagcttttcaaagatcgctttataagatgttaaatcttccccacacatctgcagctggaggtcgatagagagtcttcgaatttccgcacaacgactgtgttcccgtactgcgtcttttgttccacttctaagtttcacctttgtacaaagaaagtattcacaacaggcacaagctacaataacatatacagcaatgaattctttacaagttgtcccccttcttcaagttaatgaagtttccacattctgcatggcagaaatcccaccaatcaacacatctcttatatactgcaatatcccaatataatctgccattgtataatatctgagtattgcagcgacatatattgctttgtattattgattataccaccaatgtgtgccggtagacaagtatctgcagtatagacaggccgaatagtatcgcttttattttctacgcagtatcatctatttctcagtttctattttagttctgtattcctcgtaatcggtacgaatttcacgccccatgactgcgattaagtgttccgtccaattatttcgttgcctttctcacattttttttaatcctattttttctttggaattttctcgtttcgtcaccaaacatagttgttatcgcatccatcgagatgcatctgtcgctcgtgccttattatgacaaactcttcaattttcttttacaattcctcagcaaaattccaaatgctaagcgtcaccgccaacaatacgcgatgtcaacttgtttttcattcatttctttgccttactttcccaaaaccatgtatttttttctgctgtactttgttgccttcacacaggccaatcttgtatactccctgattccagtgtctcatgttacgtttgcttctcaccgaagtgaaaataaatgaagtagatggttaataataaa

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