2024-05-02 23:00:56, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001032796 952 bp mRNA linear INV 30-AUG-2020 DEFINITION Ciona intestinalis diencephalon/mesencephalon homeobox protein 1-like (LOC100178876), mRNA. ACCESSION NM_001032796 XM_002119104 VERSION NM_001032796.2 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE 1 (bases 1 to 952) AUTHORS Takahashi T. TITLE The evolutionary origins of vertebrate midbrain and MHB: insights from mouse, amphioxus and ascidian Dmbx homeobox genes JOURNAL Brain Res. Bull. 66 (4-6), 510-517 (2005) PUBMED 16144640 REFERENCE 2 (bases 1 to 952) AUTHORS Takahashi T and Holland PW. TITLE Amphioxus and ascidian Dmbx homeobox genes give clues to the vertebrate origins of midbrain development JOURNAL Development 131 (14), 3285-3294 (2004) PUBMED 15201221 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EAAA01000420.1. On or before Jan 19, 2019 this sequence version replaced XM_002119104.3, NM_001032796.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: AY588476.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00028081, SAMD00028084 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-178 EAAA01000420.1 19523-19700 179-351 EAAA01000420.1 20062-20234 352-430 EAAA01000420.1 21419-21497 431-509 EAAA01000420.1 21826-21904 510-613 EAAA01000420.1 22126-22229 614-678 EAAA01000420.1 22673-22737 679-760 EAAA01000420.1 23001-23082 761-952 EAAA01000420.1 23464-23655 FEATURES Location/Qualifiers source 1..952 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" /chromosome="1" /map="1" gene 1..952 /gene="LOC100178876" /gene_synonym="dmbx; DMBX1" /note="diencephalon/mesencephalon homeobox protein 1-like" /db_xref="GeneID:100178876" exon 1..178 /gene="LOC100178876" /gene_synonym="dmbx; DMBX1" /inference="alignment:Splign:2.1.0" CDS 55..777 /gene="LOC100178876" /gene_synonym="dmbx; DMBX1" /codon_start=1 /product="Dmbx protein" /protein_id="NP_001027968.2" /db_xref="GeneID:100178876" /translation="
MNYYDAIRAMSVFNALQQHYPNTQHPYNGYNSNGQIAGSLADLILKGGTFPRKHRRSRTAFTAMQLDALERTFKDGQYPDVETRESLAICTNLAEARIQVWFKNRRAKYRKQQRMLKTQECVPVTDSNETSNKADSLNNESATTSMRVKTERTSDCDETKDGGFPEKDTKPKIEKNPFSLPPPLVAGPFIQPNIHGMLDLSIRGSNYQLPTTSPYPPLATRMLQVPFQPWNLQFSNQSKK"
misc_feature 217..393 /gene="LOC100178876" /gene_synonym="dmbx; DMBX1" /note="Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner; Region: homeodomain; cd00086" /db_xref="CDD:238039" misc_feature order(217..231,235..237,286..288,304..306,343..345, 349..354,361..366,370..378,382..387) /gene="LOC100178876" /gene_synonym="dmbx; DMBX1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(223..225,232..234,352..354,361..366,373..375) /gene="LOC100178876" /gene_synonym="dmbx; DMBX1" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 179..351 /gene="LOC100178876" /gene_synonym="dmbx; DMBX1" /inference="alignment:Splign:2.1.0" exon 352..430 /gene="LOC100178876" /gene_synonym="dmbx; DMBX1" /inference="alignment:Splign:2.1.0" exon 431..509 /gene="LOC100178876" /gene_synonym="dmbx; DMBX1" /inference="alignment:Splign:2.1.0" exon 510..613 /gene="LOC100178876" /gene_synonym="dmbx; DMBX1" /inference="alignment:Splign:2.1.0" exon 614..678 /gene="LOC100178876" /gene_synonym="dmbx; DMBX1" /inference="alignment:Splign:2.1.0" exon 679..760 /gene="LOC100178876" /gene_synonym="dmbx; DMBX1" /inference="alignment:Splign:2.1.0" exon 761..952 /gene="LOC100178876" /gene_synonym="dmbx; DMBX1" /inference="alignment:Splign:2.1.0" ORIGIN
gatttttgcaatttattaagattagacaaagttccactgcttctatacgtcataatgaattattatgacgcaattcgtgcaatgtcagtgttcaacgcattacaacaacattacccaaacacccaacacccttataacggctacaatagtaacgggcaaattgctggatctctggcagatttaatactcaaaggcgggactttcccccgcaaacaccgacgcagcagaacagccttcactgccatgcaacttgacgcgttggaaagaacgttcaaagatgggcagtacccggacgtagaaacgcgagaaagtttggcaatctgtacaaatttagctgaagccaggatacaggtttggtttaaaaaccgaagagcaaaatatcgaaaacaacagagaatgttgaaaacgcaggagtgtgttcccgttacagattcgaacgaaacatccaacaaagctgattctttaaacaatgaatcagcgacaacatctatgagagtgaaaacagaaagaacaagtgattgtgacgaaacaaaggacggtggtttcccagaaaaagatacgaaaccaaaaattgaaaagaatccgttcagtttgcccccacctctagttgctggtccattcattcaaccaaatattcatggaatgttggatctgagcatcaggggatcaaactaccagttgccgacaacctccccctaccctccccttgccacaagaatgctacaagttcctttccaaccttggaatcttcaatttagcaatcaatccaagaaatgatgatgtaatcgttatatctgtgatgtcataatacatgagctggcactcaccccatcatggctgttttatcgataatttattgcacataacttttattcgtgtcgatttaatgcgctgcacactgtctatctgtaaaatagaaatataataaattcttcattttaaaaatcaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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