LOCUS       NM_001032790            2020 bp    mRNA    linear   INV 04-MAY-2019
DEFINITION  Ciona intestinalis nucleolin like protein CiRGG1 (cirgg1), mRNA.
ACCESSION   NM_001032790
VERSION     NM_001032790.1
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
REFERENCE   1  (bases 1 to 2020)
  AUTHORS   Satou Y, Kawashima T, Shoguchi E, Nakayama A and Satoh N.
  TITLE     An integrated database of the ascidian, Ciona intestinalis: towards
            functional genomics
  JOURNAL   Zool. Sci. 22 (8), 837-843 (2005)
   PUBMED   16141696
REFERENCE   2  (bases 1 to 2020)
  AUTHORS   Satou Y, Yamada L, Mochizuki Y, Takatori N, Kawashima T, Sasaki A,
            Hamaguchi M, Awazu S, Yagi K, Sasakura Y, Nakayama A, Ishikawa H,
            Inaba K and Satoh N.
  TITLE     A cDNA resource from the basal chordate Ciona intestinalis
  JOURNAL   Genesis 33 (4), 153-154 (2002)
   PUBMED   12203911
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AB033282.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB033282.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00013799, SAMD00028078
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2020
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
     gene            1..2020
                     /gene="cirgg1"
                     /gene_synonym="NCL"
                     /note="nucleolin like protein CiRGG1"
                     /db_xref="GeneID:448950"
     exon            1..81
                     /gene="cirgg1"
                     /gene_synonym="NCL"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    10..12
                     /gene="cirgg1"
                     /gene_synonym="NCL"
                     /note="upstream in-frame stop codon"
     CDS             55..1644
                     /gene="cirgg1"
                     /gene_synonym="NCL"
                     /codon_start=1
                     /product="nucleolin like protein CiRGG1"
                     /protein_id="NP_001027962.1"
                     /db_xref="GeneID:448950"
                     /translation="

MVQLKKKSKSDKTSVIKPVKVTKAKKENVEMKKGKKSKKVAAEPEATNEENELLKQEVENEENDEKVVKTEDSDDEQEESADESSDDDDSEEEEKVKPKVAKKESKSKAKKVVKESDEESDDDDDDSEEEEDDEKEDESDEESEDEDEDDDDDDDDEENEEEVKLVKRKATETEEVATKKVKLDPSEVATLLFTELPEGLNDAVFNKFLKSKEIKCVACRANYGRQKAYVDVRAEDKDAALQLHQVEWKGQEIQVTEAQSKAQDRKGDFASNRNDKDERTLFVKNLPYSADENAIAELFDGVKEVRLLTDRESGRPKGMAFIEFDSTAEKETAFGLKDELEMDGRSLYLDNVTGGGGGGRGRGNRGGRGGFGRGGGGFGAGRGRGGRGPSAPSKTLFVKGITEDMTRDTLYETFSGATDIRIPQDRDTGKNKFFAYVEYQSESSATEVYKSSKGGMHVDGSRLTIDYAAERSNDGGGRGGGRGGRGGGFRGGRGGRGGRGGGRGGHSAAKHKGSIQSFEGKRTKFEDSD"

     misc_feature    880..1104
                     /gene="cirgg1"
                     /gene_synonym="NCL"
                     /note="RNA recognition motif (RRM) superfamily; Region:
                     RRM_SF; cl17169"
                     /db_xref="CDD:450164"
     misc_feature    1234..1458
                     /gene="cirgg1"
                     /gene_synonym="NCL"
                     /note="RNA recognition motif (RRM) superfamily; Region:
                     RRM_SF; cl17169"
                     /db_xref="CDD:450164"
     exon            82..135
                     /gene="cirgg1"
                     /gene_synonym="NCL"
                     /inference="alignment:Splign:2.1.0"
     exon            136..237
                     /gene="cirgg1"
                     /gene_synonym="NCL"
                     /inference="alignment:Splign:2.1.0"
     exon            238..288
                     /gene="cirgg1"
                     /gene_synonym="NCL"
                     /inference="alignment:Splign:2.1.0"
     exon            289..345
                     /gene="cirgg1"
                     /gene_synonym="NCL"
                     /inference="alignment:Splign:2.1.0"
     exon            346..525
                     /gene="cirgg1"
                     /gene_synonym="NCL"
                     /inference="alignment:Splign:2.1.0"
     exon            526..613
                     /gene="cirgg1"
                     /gene_synonym="NCL"
                     /inference="alignment:Splign:2.1.0"
     exon            614..731
                     /gene="cirgg1"
                     /gene_synonym="NCL"
                     /inference="alignment:Splign:2.1.0"
     exon            732..853
                     /gene="cirgg1"
                     /gene_synonym="NCL"
                     /inference="alignment:Splign:2.1.0"
     exon            854..1007
                     /gene="cirgg1"
                     /gene_synonym="NCL"
                     /inference="alignment:Splign:2.1.0"
     exon            1008..1222
                     /gene="cirgg1"
                     /gene_synonym="NCL"
                     /inference="alignment:Splign:2.1.0"
     exon            1223..1352
                     /gene="cirgg1"
                     /gene_synonym="NCL"
                     /inference="alignment:Splign:2.1.0"
     exon            1353..1431
                     /gene="cirgg1"
                     /gene_synonym="NCL"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gataatatttaaatttttctggttggtttcttcctgatttattcaaacaaaacaatggttcaactgaagaaaaaatcaaagagtgataaaacatcagtgataaaaccagtgaaagtaacaaaggctaaaaaagagaacgttgaaatgaaaaagggaaagaaaagcaaaaaagttgccgccgaacctgaagcaacaaacgaagaaaatgaattactgaagcaagaagttgagaatgaggaaaatgatgaaaaagttgtaaaaactgaagactccgatgatgagcaagaggaaagtgcggatgaaagttctgatgatgacgattcggaagaagaagaaaaagtaaagccaaaagtagcaaagaaagaaagtaaaagtaaggctaaaaaagttgtcaaagaaagtgatgaagaatctgatgatgatgatgatgattctgaggaagaagaagatgatgagaaagaggatgagagtgatgaggagagtgaagatgaagatgaagacgacgatgatgatgatgatgatgaggaaaatgaggaagaggtgaagttagtcaagcggaaagcaactgaaactgaagaagttgcgacgaagaaagtcaaacttgatccatcagaagttgccaccttacttttcactgagctaccagagggactgaatgacgcagttttcaacaaatttttaaaaagtaaagaaattaaatgcgttgcttgccgtgcgaactatggaagacagaaagcttacgttgatgttcgggctgaagataaagatgcggctcttcagctccaccaagtggaatggaagggacaagagattcaagtaacagaagctcaatctaaagcacaggatagaaaaggtgattttgcatcaaaccgaaacgataaagatgaaagaacattgtttgtgaaaaatcttccgtacagtgcggatgagaatgcgatcgccgagctctttgatggggttaaagaagttcgtttactaactgacagggaaagtggaagacctaaaggaatggcattcattgagtttgattcaactgctgaaaaagaaacggcttttggtttgaaagatgagctggagatggacggaagatctttgtatcttgataatgttactggtggtggtggtggtggaagaggtcgtggtaatcgaggtggaagaggagggtttggccgtggaggcggtggatttggtgctgggagaggcagagggggaagaggtccatctgcaccgagcaaaacactttttgtgaaaggaatcacagaggacatgacacgagatactttgtatgaaaccttctctggtgcaacagacattcgtattccccaggatcgagacactggaaaaaataaattctttgcttatgttgaatatcaatctgagagctcggcaacagaagtttataaaagttcgaaaggaggtatgcatgttgatggaagtagattgaccatcgattatgcagcggaacgcagcaatgatggtggtggtcgtggaggtggacgaggaggtcgtggtggtggatttcgtggaggtcgcggcggacgtggtggtcgtggtggcggtagaggggggcattcagcagccaaacataaggggtcaattcaaagtttcgaaggaaaacgcacgaagtttgaagattccgactgatttaatggtcgctgacgtcatgcaccttgcgtaatcatcgaacctgacgtcagtggtctgtgagctcaatgcgctctcaatgacgtcataactcgtttttttatggaattcgtgtcgagttttagtttccattatgataccagcgatatcgtgagcgccatttttaaatcgacgtctttcgatcaatttcgtttccagttatttggttgaattaacgtcttgggttctttactatcaatactgccactatgtgtgggcataatttgctccgatattttctcaacagttttacataccactgctgagttttagttgaccacttgttgtcactgtctcaaaataaatgaactaccaaattaaaaaaaaaaaaaaaaaa

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