2024-05-02 17:05:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001032656 1775 bp mRNA linear INV 04-MAY-2019 DEFINITION Ciona intestinalis Myc-induced nuclear antigen with a molecular mass of 53 kDa-like 1 (mina53-like1), mRNA. ACCESSION NM_001032656 VERSION NM_001032656.1 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. REFERENCE 1 (bases 1 to 1775) AUTHORS Tokuoka M, Imai KS, Satou Y and Satoh N. TITLE Three distinct lineages of mesenchymal cells in Ciona intestinalis embryos demonstrated by specific gene expression JOURNAL Dev. Biol. 274 (1), 211-224 (2004) PUBMED 15355799 REFERENCE 2 (bases 1 to 1775) AUTHORS Satou Y, Yamada L, Mochizuki Y, Takatori N, Kawashima T, Sasaki A, Hamaguchi M, Awazu S, Yagi K, Sasakura Y, Nakayama A, Ishikawa H, Inaba K and Satoh N. TITLE A cDNA resource from the basal chordate Ciona intestinalis JOURNAL Genesis 33 (4), 153-154 (2002) PUBMED 12203911 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB178237.2. ##Evidence-Data-START## Transcript exon combination :: AB178237.2, AK115936.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN06445658 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1775 /organism="Ciona intestinalis" /mol_type="mRNA" /db_xref="taxon:7719" gene 1..1775 /gene="mina53-like1" /note="Myc-induced nuclear antigen with a molecular mass of 53 kDa-like 1" /db_xref="GeneID:494417" exon 1..126 /gene="mina53-like1" /inference="alignment:Splign:2.1.0" exon 127..269 /gene="mina53-like1" /inference="alignment:Splign:2.1.0" CDS 210..1547 /gene="mina53-like1" /note="Ci-Mina53-like1" /codon_start=1 /product="Myc-induced nuclear antigen with a molecular mass of 53 kDa-like 1" /protein_id="NP_001027828.1" /db_xref="GeneID:494417" /translation="
MPARLKWTDEYMKENYGDLRVKLESKYEKDFKPEGDRGMGQDSMRRFLDTYIEHDKYMVSQLPDPLSEEVTVPQPILCGSFRERILEANIWMSSGNTKSLLHRDADNAFNCLLNGTKDWILIDPVHQDLLPVAVESGSPYGGYTLINVNKVDLIEFPEFKEVPWYYANVSAGDCLFLPKGHWHQVRSYGAKNLAVSILFSRLNDFNPKGCPKEGVPPSELLSEVPMVWTYDGFEAQTMGNADPFELKDELEMKCKHAEGKLTLEMFEEDMISGLDVEEEAYKGTLKVDADEYEIPDENIEIMKQRAKAIMDLIDPENIGYYDCSQLEDMTVDTLKKISDIKDPDPANTDQYEFLHLHPNLVRKTILSSLELSKESFMEKYHSHEGSMAGAQWIFETLDSDNDGRCTVAEVKGNMEKVLERFQDSLLADVTAHQAKKINQNSKDEL"
misc_feature 213..824 /gene="mina53-like1" /note="Cupin-like domain; Region: Cupin_8; pfam13621" /db_xref="CDD:433355" exon 270..517 /gene="mina53-like1" /inference="alignment:Splign:2.1.0" exon 518..618 /gene="mina53-like1" /inference="alignment:Splign:2.1.0" exon 619..747 /gene="mina53-like1" /inference="alignment:Splign:2.1.0" exon 748..949 /gene="mina53-like1" /inference="alignment:Splign:2.1.0" exon 950..1133 /gene="mina53-like1" /inference="alignment:Splign:2.1.0" exon 1134..1294 /gene="mina53-like1" /inference="alignment:Splign:2.1.0" exon 1295..1500 /gene="mina53-like1" /inference="alignment:Splign:2.1.0" exon 1501..1757 /gene="mina53-like1" /inference="alignment:Splign:2.1.0" ORIGIN
tgttgttttatattgttggtgtttgtatttatgtgcaagttgcactaagtgtagagagtgttccacgtggtcataatgagtggttgggctttcatagaccagctgaaagccacattgatgttttaactgaagttcccaccccacaaaagttctgggaggattattgtagtttgggcaaaccagtcttgttgaagggaattgcattggatatgcctgcaaggctgaaatggacagatgaatacatgaaagaaaactatggggatttgagggtgaaacttgaaagcaaatatgaaaaagacttcaaacctgagggtgatcgtggtatgggtcaagactccatgcgacgattccttgacacctatattgagcatgacaagtacatggtgtcacagttacctgacccactctcagaagaagtaacagtcccccaaccaatcttatgtggttcattccgggagagaattctggaagcaaatatttggatgagttcaggaaacacaaagagtttgttgcacagagatgcagacaatgctttcaattgtcttttgaacggaacaaaagattggattctgattgaccctgtgcatcaggaccttctgcctgttgctgtagaaagtggttcaccatatggcgggtacacactaatcaatgtgaacaaagttgatttgatagaatttccagaattcaaagaagtaccgtggtattacgcgaatgtatctgcaggagattgtctgtttcttcctaaaggacattggcaccaggttcgatcctacggagcgaaaaacttggctgtgagcatcttgttttcgcgcttgaatgattttaatcccaaaggctgccccaaggagggagttcctccttcagagttgttaagtgaggtaccgatggtgtggacatacgacgggtttgaggctcaaactatgggaaatgcagatccatttgagttgaaagatgagcttgagatgaagtgcaaacatgcagaggggaaactaactcttgagatgttcgaggaagacatgatatctgggttggatgtggaggaagaagcttacaaaggaacgcttaaggtggatgcggatgaatacgagattcctgatgaaaatatcgagattatgaagcaaagagctaaagcgatcatggacctcattgatcctgaaaatattggatattatgattgtagtcaacttgaggatatgacagtagacacactgaagaaaatatcggatataaaagatccagatcctgctaataccgatcaatatgaattcttacatcttcatcccaatcttgttaggaaaactattctgagttctcttgaattatcgaaagaaagtttcatggaaaaatatcattcacacgagggttcgatggccggggctcaatggatctttgagactttggattcggacaatgacggtcgatgcacagtggctgaagtaaagggaaatatggagaaggttttggaaagattccaagacagtttgcttgcagatgttacagcccaccaagctaagaagatcaatcaaaattccaaggatgaattatgatcacgttatatttgatgccataagagatttgccacgatgagattattttatttgtaaaatccacttttgatcgtctgttcaatcggtatcttgtgcaatttgtacaataataaaagaaaaagaaatagttttattgaggtggcagttccaaacatgctgcatgtaatatagcagccacatcctgccagataaataaaacattaaaactgtaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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