LOCUS       NM_001032422            1698 bp    mRNA    linear   INV 04-MAY-2019
DEFINITION  Ciona intestinalis homeobox transcription factor Pax1/9 (pax1/9),
            mRNA.
ACCESSION   NM_001032422
VERSION     NM_001032422.1
KEYWORDS    RefSeq.
SOURCE      Ciona intestinalis (vase tunicate)
  ORGANISM  Ciona intestinalis
            Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia;
            Cionidae; Ciona.
REFERENCE   1  (bases 1 to 1698)
  AUTHORS   Satou Y, Kawashima T, Shoguchi E, Nakayama A and Satoh N.
  TITLE     An integrated database of the ascidian, Ciona intestinalis: towards
            functional genomics
  JOURNAL   Zool. Sci. 22 (8), 837-843 (2005)
   PUBMED   16141696
REFERENCE   2  (bases 1 to 1698)
  AUTHORS   Imai KS, Hino K, Yagi K, Satoh N and Satou Y.
  TITLE     Gene expression profiles of transcription factors and signaling
            molecules in the ascidian embryo: towards a comprehensive
            understanding of gene networks
  JOURNAL   Development 131 (16), 4047-4058 (2004)
   PUBMED   15269171
REFERENCE   3  (bases 1 to 1698)
  AUTHORS   Satou Y and Satoh N.
  TITLE     Genomewide surveys of developmentally relevant genes in Ciona
            intestinalis
  JOURNAL   Dev. Genes Evol. 213 (5-6), 211-212 (2003)
   PUBMED   12736827
REFERENCE   4  (bases 1 to 1698)
  AUTHORS   Satou Y, Yamada L, Mochizuki Y, Takatori N, Kawashima T, Sasaki A,
            Hamaguchi M, Awazu S, Yagi K, Sasakura Y, Nakayama A, Ishikawa H,
            Inaba K and Satoh N.
  TITLE     A cDNA resource from the basal chordate Ciona intestinalis
  JOURNAL   Genesis 33 (4), 153-154 (2002)
   PUBMED   12203911
REFERENCE   5  (bases 1 to 1698)
  AUTHORS   Ogasawara M, Wada H, Peters H and Satoh N.
  TITLE     Developmental expression of Pax1/9 genes in urochordate and
            hemichordate gills: insight into function and evolution of the
            pharyngeal epithelium
  JOURNAL   Development 126 (11), 2539-2550 (1999)
   PUBMED   10226012
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AB020762.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB020762.1, AB210627.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN08516546 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1698
                     /organism="Ciona intestinalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:7719"
                     /chromosome="11"
                     /map="11"
     gene            1..1698
                     /gene="pax1/9"
                     /gene_synonym="Ci-Pax1/9"
                     /note="homeobox transcription factor Pax1/9"
                     /db_xref="GeneID:445592"
     exon            1..124
                     /gene="pax1/9"
                     /gene_synonym="Ci-Pax1/9"
                     /inference="alignment:Splign:2.1.0"
     CDS             22..1293
                     /gene="pax1/9"
                     /gene_synonym="Ci-Pax1/9"
                     /codon_start=1
                     /product="homeobox transcription factor Pax1/9"
                     /protein_id="NP_001027594.1"
                     /db_xref="GeneID:445592"
                     /translation="

MINMQTATQNQSVGFSSPLQNPGMVSMMPTSAASNQTFGEVNQLGGVFVNGRPLPNALRLRIIELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPGVVNAIKDYKVRDPGIFAWEIRDRLLSDAVCDKYNVPSVSSISRILRNKIGNVLHPNNPLNPNYVPISNIENSTPPQSTNMRPTYNSPIYNHYMVPPTGKPNMPNAPPTIRGSPMPCHPFYSHSVTEILRGSRFDQPQLQGTAPSNSMTSESISVAPPNGSYHHQLLPVSVPSVIPKLEEWNNMTPYGVPPPTQVTTGHLNGGEKSSPVSRDITSLQQSPTSEENRSAHPLSTLYVTPPANTPYVTSAPQMANNSHHYVTPGLHSIVXPSRLAATIFTDERCGPRLNRKPGTPEECTQLTKWRRTTRIP"

     misc_feature    136..513
                     /gene="pax1/9"
                     /gene_synonym="Ci-Pax1/9"
                     /note="Paired Box domain; Region: PAX; cd00131"
                     /db_xref="CDD:238076"
     misc_feature    order(145..150,163..165,169..177,181..183,196..198,
                     232..234,238..240,265..267,274..276,280..285,295..297,
                     322..342,346..357,412..420,475..477,481..486,493..495,
                     502..504)
                     /gene="pax1/9"
                     /gene_synonym="Ci-Pax1/9"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238076"
     misc_feature    427..>1140
                     /gene="pax1/9"
                     /gene_synonym="Ci-Pax1/9"
                     /note="Sec24-related protein; Provisional; Region:
                     PTZ00395"
                     /db_xref="CDD:185594"
     exon            125..784
                     /gene="pax1/9"
                     /gene_synonym="Ci-Pax1/9"
                     /inference="alignment:Splign:2.1.0"
     exon            785..1035
                     /gene="pax1/9"
                     /gene_synonym="Ci-Pax1/9"
                     /inference="alignment:Splign:2.1.0"
     exon            1036..1319
                     /gene="pax1/9"
                     /gene_synonym="Ci-Pax1/9"
                     /inference="alignment:Splign:2.1.0"
     exon            1320..1698
                     /gene="pax1/9"
                     /gene_synonym="Ci-Pax1/9"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1698
                     /gene="pax1/9"
                     /gene_synonym="Ci-Pax1/9"
                     /note="18 a nucleoties"
ORIGIN      

gttagttacaaagttattattatgataaacatgcaaaccgccacacagaaccagtcggttgggtttagttcgccgttacaaaaccctggcatggtttccatgatgccaacatcagctgcaagtaatcaaactttcggggaggtaaaccaactcggcggggtatttgtgaacggacgaccgctgcccaacgctctaagactccgaataatcgagcttgctcaactggggattcggccttgcgacattagtcggcaactacgggtctcacatggctgtgtaagcaagatactagcccgttataatgagacaggctcgatcttaccaggagcaatcggtggtagcaaaccaagagtcacaacacctggtgttgtgaacgcgataaaggattacaaagtcagagaccctggtatatttgcatgggagatcagggaccgccttctaagcgacgcagtttgcgataaatacaatgtcccatcagtaagttccatcagccgaatattaaggaacaaaatcggaaacgtccttcacccaaacaatcctctcaaccctaactacgttcccatcagcaacatcgagaattcgaccccaccacaaagcactaacatgaggcccacctacaacagcccaatatacaatcattatatggtcccaccaacaggtaaacccaacatgccaaacgccccaccaaccatacgaggttccccaatgccttgtcatccgttctattctcattcagtgacagaaatactgagaggatctcgtttcgatcaaccacagttacaaggaaccgcacccagcaattcgatgacgtcagaatcgatctctgtggcgccacctaacggtagttaccaccaccagttgctcccggtgtctgtaccaagcgtcatccctaaacttgaagaatggaataacatgacgccgtacggtgttccgccccctacacaagttacaacgggacatttaaacgggggagagaaatcgtcacccgtgtcacgtgatatcacgtcactgcaacaatcacccacgtcagaggagaatcgatcggcacatccgctttccactctctacgtcacaccacctgccaacaccccatacgtcacttccgctccacaaatggcgaataattcccaccattatgtgacaccgggcctacattccatcgtatgnccatccaggttggcagcaacaatctttaccgatgaacggtgtggaccccgtcttaacaggaaacccggcaccccagaggagtgtacacagcttacaaaatggaggcgtacaacacggataccctaaactcgctgtctcggctccccaaacaggagacggaaaaaattccggaaatcaaaaactcgaccgtccacccatccattctaatggtcagacgtcatcaacgtgatgtcatatcgatatattatgacgtcataataccttatgaataaggattgtttccattcgcgaattgaatcactgccgccattgctgcctttggtttattatgcaactcagtgaagccaatattgtatctattcactaactagtagataaacaactaacattataccgccatcttatttgtagttttcacttttctgaaactttttttcgaaaccaaatttgattcgacacaaaacttgaaatttaaacagttttttttgcaccgaagccatattatttgtaataataaacaaaaatgttacg

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