2024-05-03 19:42:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_077965 1208 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Homeobox protein ceh-37 (ceh-37), mRNA. ACCESSION NM_077965 VERSION NM_077965.5 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1208) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 1208) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1208) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 1208) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003284). On Oct 18, 2019 this sequence version replaced NM_077965.4. FEATURES Location/Qualifiers source 1..1208 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="X" gene 1..1208 /gene="ceh-37" /locus_tag="CELE_C37E2.5" /db_xref="GeneID:181530" /db_xref="WormBase:WBGene00000458" CDS 3..839 /gene="ceh-37" /locus_tag="CELE_C37E2.5" /standard_name="C37E2.5a" /note="Confirmed by transcript evidence" /codon_start=1 /product="Homeobox protein ceh-37" /protein_id="NP_510366.1" /db_xref="EnsemblGenomes-Gn:WBGene00000458" /db_xref="EnsemblGenomes-Tr:C37E2.5a" /db_xref="GeneID:181530" /db_xref="WormBase:WBGene00000458" /translation="
MTSYSYFTIPSTATTGFNYPVQPMTMFSGAPYNAAMIPRKNRRERTTYSRQQLEILETLFNETQYPDVFARERVADQIRLQESRIQVWFKNRRAKYRLQEKQKPKRSNEKSQEHKSEDQQQTDVLDGEPLKGGSPGYQPQIKSELESCDGAVASGKLGTPKSISPVETTASTTSSNTSAAELQWNGDHKILGFGKNETTTSAAVSPTADNASTPSSSSSITATSSLPTTSSSLSVYNYPAIYPQWGLDYSTYANPQYAQFSHNPYAGTPFWYSNGNNL"
misc_feature order(126..140,144..146,195..197,213..215,252..254, 258..263,270..275,279..287,291..296) /gene="ceh-37" /locus_tag="CELE_C37E2.5" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(132..134,141..143,261..263,270..275,282..284) /gene="ceh-37" /locus_tag="CELE_C37E2.5" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 135..293 /gene="ceh-37" /locus_tag="CELE_C37E2.5" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
ggatgaccagctatagttacttcacaattccttcaactgccacaaccgggttcaattatccggttcaaccaatgactatgtttagtggagcaccatacaatgcagcaatgatcccacggaagaatcgtcgcgaacgaaccacttacagccgtcagcagttggaaattttagagacattgtttaacgaaactcagtatcctgatgtatttgctcgcgagagagtcgccgaccagattcgtcttcaagaaagtcgaattcaggtgtggttcaaaaaccgacgtgcaaagtaccgcctccaagagaaacaaaaaccaaaaagaagcaacgaaaagagccaggagcacaaaagtgaagatcaacaacaaacagatgttttggatggggagcccctgaaaggaggctcgcctggttatcagccacaaatcaaaagtgaactggagagttgtgacggcgcagtggccagcggtaagctaggcacgccgaagagcatttctccagtggagacgaccgcaagcaccactagctccaatacatctgctgcagagctgcaatggaacggtgatcacaaaattttgggattcggaaaaaatgagacaactacttctgccgctgtaagtccgacagccgacaatgcatcaacaccatcctcttcaagctcaatcaccgctacaagctcattgccaacaacgtcatcttctttatctgtctataactatccggcaatctatccacaatggggacttgactacagtacctacgccaatccgcaatacgctcaattctcgcacaatccttacgcaggcaccccgttctggtattcaaatggaaataatttgtaaatttgaagtgtctaggtactacttaaactaaaacctatttgtattcttatttagcattcattcgtttttgaagaaatgtgcattccatcatcccatcatccttgaaacattgtaataaattgtcattttcatgttcctttcctgtaaatttaattctgttttgtttttgagtttactaaactgaactaccagctcaactccatgcttggtttaataaccaatttctttaattttaatgtctcttcacaaatcaagtttttcctcagaacttgatgtttttgcattcccataactcccgttcacttttcattatttcctgattcagtcactattctattcagtgtttgatacaataaatcacattattta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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