LOCUS       NM_076395                843 bp    mRNA    linear   INV 22-NOV-2023
DEFINITION  Caenorhabditis elegans Homeobox protein ceh-1 (ceh-1), mRNA.
ACCESSION   NM_076395
VERSION     NM_076395.7
DBLINK      BioProject: PRJNA158
KEYWORDS    RefSeq.
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 843)
  AUTHORS   Sulson,J.E. and Waterston,R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282 (5396), 2012-2018 (1998)
   PUBMED   9851916
  REMARK    Erratum:[Science 1999 Jan 1;283(5398):35]
REFERENCE   2  (bases 1 to 843)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-NOV-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 843)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (29-OCT-2023) WormBase Group, European Bioinformatics
            Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org
REFERENCE   4  (bases 1 to 843)
  AUTHORS   Sulson,J.E. and Waterston,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger
            Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute
            at Washington University, St. Louis, MO 63110, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by WormBase. This
            record is derived from an annotated genomic sequence (NC_003284).
            
            On Feb 2, 2021 this sequence version replaced NM_076395.6.
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Caenorhabditis elegans"
                     /mol_type="mRNA"
                     /strain="Bristol N2"
                     /db_xref="taxon:6239"
                     /chromosome="X"
     gene            1..843
                     /gene="ceh-1"
                     /locus_tag="CELE_F16H11.4"
                     /db_xref="GeneID:191614"
                     /db_xref="WormBase:WBGene00000428"
     CDS             3..518
                     /gene="ceh-1"
                     /locus_tag="CELE_F16H11.4"
                     /standard_name="F16H11.4"
                     /note="Confirmed by transcript evidence"
                     /codon_start=1
                     /product="Homeobox protein ceh-1"
                     /protein_id="NP_508796.2"
                     /db_xref="GeneID:191614"
                     /db_xref="WormBase:WBGene00000428"
                     /translation="

MNGFRVEDLLSEREKDSNSDEATHQKSPADGGKSSRKLKMRRARTAFTYEQLVALENKFKTSRYLSVVERLNLAIQLQLSETQVKIWFQNRRTKWKKHNPGQDANTPQTPPSSDETQIQPILPANPITSFSSLLLPPIISPANSAVLQGTSIPLTLFNLNQILMPQNVGFN"

     misc_feature    6..356
                     /gene="ceh-1"
                     /locus_tag="CELE_F16H11.4"
                     /note="Homeodomain-containing transcription factor
                     [Transcription]; Region: COG5576"
                     /db_xref="CDD:227863"
     misc_feature    order(123..137,141..143,192..194,210..212,249..251,
                     255..260,267..272,276..284,288..293)
                     /gene="ceh-1"
                     /locus_tag="CELE_F16H11.4"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(129..131,138..140,258..260,267..272,279..281)
                     /gene="ceh-1"
                     /locus_tag="CELE_F16H11.4"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    132..290
                     /gene="ceh-1"
                     /locus_tag="CELE_F16H11.4"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
ORIGIN      

ctatgaatggctttcgtgtcgaagatttgctatccgaacgggaaaaagactccaactcggatgaagccacgcatcaaaagtctccagctgatggcgggaaatcgagtcggaaactcaaaatgcggcgagccagaactgcattcacttatgagcaattggttgcgctggaaaacaaattcaagacttcacgttatttgagcgtcgtagagcgtttaaatttggcaattcaacttcagctttctgaaactcaggtaaaaatctggttccaaaaccggcgtaccaagtggaagaaacacaatccgggacaagatgcaaatacgcctcaaaccccaccatcttccgatgaaactcagattcaaccaattctaccggcaaatcctataacttcatttagttcattgcttttgccgccaataatatctccagcaaactcagcagttctacaaggaacatccatcccattaacactgttcaacttgaaccaaattctaatgcctcaaaatgtgggcttcaattaaatggatattttgtttttgttttttttttcggtgtttttttttctcttcttacaatttgtacgggttctgagcttaaactctgaccgtttaatctattccatttctatcacatgagcttgaaacttggcttaacttatagcccccacacctagtttttaaaacaaccattttagtgtgtagactccggtttctatatctttgaatccacatatctttctcatttcctgcaatcccatttacccaatacttcaatttcattcaatccggttttattatcgcttgatcgatatgaaatgtcttaaatacaataaaattggcccatgga

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