2024-05-03 14:46:53, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_063925 1184 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Homeobox protein ceh-62 (ceh-62), mRNA. ACCESSION NM_063925 VERSION NM_063925.6 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1184) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 1184) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1184) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 1184) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003280). On May 27, 2020 this sequence version replaced NM_063925.5. FEATURES Location/Qualifiers source 1..1184 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="II" gene 1..1184 /gene="ceh-62" /locus_tag="CELE_R06F6.6" /db_xref="GeneID:187642" /db_xref="WormBase:WBGene00011069" CDS 3..839 /gene="ceh-62" /locus_tag="CELE_R06F6.6" /standard_name="R06F6.6" /note="Confirmed by transcript evidence" /codon_start=1 /product="Homeobox protein ceh-62" /protein_id="NP_496326.2" /db_xref="EnsemblGenomes-Gn:WBGene00011069" /db_xref="EnsemblGenomes-Tr:R06F6.6" /db_xref="GeneID:187642" /db_xref="WormBase:WBGene00011069" /translation="
MVHPSSAFHPYTRPIPTTSGHDLPVDDSLRLLLSAEALIALAQLQDASKILPSYEPVKDFSPQLLPAMTPTPIIATPSIPEQPQPLQSPSAPNEKSRRKRTTFSPEQATRLEAEYIGDSYMAREKRHLLAQSLKLSENQVKTWFQNRRAKDKRDRKSENASNHTSNSRRSSPSRKSSSDSTPTPTQATQFDMPTQIQTASPPTTADSAIFPPTSPESIIQKIEQFPSNQILPNFDILQTYLQSLSSSQIPLQFVPSTPPLFDPNMLVNFQSPLQSAII"
misc_feature order(291..305,309..311,360..362,378..380,417..419, 423..428,435..440,444..452,456..461) /gene="ceh-62" /locus_tag="CELE_R06F6.6" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 297..458 /gene="ceh-62" /locus_tag="CELE_R06F6.6" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(297..299,306..308,426..428,435..440,447..449) /gene="ceh-62" /locus_tag="CELE_R06F6.6" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" ORIGIN
agatggttcatccctcgtcagcatttcacccgtacacccgtccaattcccaccacttccggtcatgatttgccagttgatgatagtctcaggttactgctctctgctgaagccctcatagcattagctcaactccaagatgcatcgaagatcttgccatcatatgagccagtcaaggatttttctccacaacttcttccagcaatgactccaacgccgattatagcaacaccttcgattcctgagcaaccacagccacttcagtctccaagtgctccaaatgaaaagtcacgaagaaaaagaacaacgttctcaccagaacaagcaactcgtcttgaagcggaatacattggtgacagttacatggcccgggagaagcgtcatttgttggctcaatccttaaaactctcagaaaaccaagtgaagacatggttccagaatcgaagagcaaaggataaacgagatagaaaatcggagaatgcatcaaaccacacttccaactcaagacggtcatccccatctcgaaagtcttcatccgactccacaccaactccaactcaagccacccaattcgacatgccgactcaaattcaaactgctagccctccaactaccgctgactctgcgatttttccaccgacttccccagaaagcattattcaaaaaattgagcagttcccaagcaatcagattcttcccaactttgatatccttcaaacttatttgcaatctttgtcaagctctcagatcccacttcaatttgtaccctcaactcctccattattcgacccaaatatgcttgtaaatttccagtcacctttgcaatcggcaattatttgaattttgatttagattaggaaatcattagataactgtatcgtttattggaatctcggcagaatattgttttcattttcatattttgctaatctatcatattttaattcgggttacttttccctttgattttatattcatatttgtcacctaatttttgtaaatctcaatcgtttgaatttggaattttttttgtctgctgacaaaattttttttaatttgaattttttccacttccgatggctcgaccctatttttgtccctgttctgtgctttccgtcgcttagttattatttttcaataacttggcgaaattaatttgtttttggaataaattatttcagtttt
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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