2024-05-03 22:23:07, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001393326 1424 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Homeobox protein pal-1 (pal-1), mRNA. ACCESSION NM_001393326 VERSION NM_001393326.1 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1424) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 1424) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1424) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 1424) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003281). FEATURES Location/Qualifiers source 1..1424 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="III" gene 1..1424 /gene="pal-1" /locus_tag="CELE_C38D4.6" /db_xref="GeneID:175638" /db_xref="WormBase:WBGene00003912" CDS 114..920 /gene="pal-1" /locus_tag="CELE_C38D4.6" /standard_name="C38D4.6b" /note="Confirmed by transcript evidence" /codon_start=1 /product="Homeobox protein pal-1" /protein_id="NP_001379426.1" /db_xref="GeneID:175638" /db_xref="WormBase:WBGene00003912" /translation="
MSVDVKSDFSENESSSTPSPTTVPADVTWPHYPMMPFMQPHPLREKMLQPTFDPQIYGRWSQMGDTGFYGHPDLYPFGLPQLAANGQIPAVEAVDVKPPLSNGSSSSDSGMYPSPSDMMTPFPSTSSGAASSSELSAAAAAAANYQMRAATCYQQSVWPFMDYQQGFSWKMPLGNNHGKDRRSSSDGKTLPTGPGTNNVRVRTADKYRMVYSDYQRLELEKEFHTSPFITSDRKSQLSTMLSLTERQIKIWFQNRRAKDRRDKQKIRL"
misc_feature order(729..740,744..746,795..797,813..815,852..854, 858..863,870..875,879..887,891..896) /gene="pal-1" /locus_tag="CELE_C38D4.6" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(732..734,741..743,861..863,870..875,882..884) /gene="pal-1" /locus_tag="CELE_C38D4.6" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 735..893 /gene="pal-1" /locus_tag="CELE_C38D4.6" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
aactttcatcgctcatttatttcctaatgaacatcgtaatggaacctcaattccagatgggctcaatggccggtagacttactattatttgggcgagtagatcaaatatgagaatgtcggtcgatgtcaagtcggatttttcggaaaacgagtcctcatcaacaccttcaccaacaacagttccagcagatgtcacgtggcctcactatccaatgatgccattcatgcaaccacatcctctgagagaaaagatgctgcaaccaacatttgatccacaaatctatggaaggtggtcacaaatgggtgatactggtttttacggacatccggatctctatccattcggccttccacaactcgctgccaacggacaaattccagcagtagaagccgttgatgtgaagccaccgctttcgaatggaagtagcagtagtgatagtggaatgtatccatcaccgagtgatatgatgacaccgttcccatcaacatcatctggagctgcatcttcttcagagctttcagcagctgctgctgctgcagccaactaccagatgagagctgccacgtgttatcagcaatctgtttggccgtttatggattatcaacagggattctcgtggaaaatgcctcttggaaacaatcatggaaaggatcgaagatcaagcagtgatgggaaaacattaccaacgggacctggaacgaataatgtccgtgtacgaacagctgacaaataccgtatggtttactcggattatcaacgccttgaactggaaaaagaattccatacatcgccattcataacatcagatcgcaagtcccaattgtcgacgatgttaagcttgacagaacgacaaatcaagatttggtttcaaaataggcgtgcaaaggatcgtcgtgacaaacagaagattcggctataagtactcatctacttacaaagaaaatgtacaaaaattctgggaattttcatatttttctagaatattgtacacatttattatatttttacatttctctcgcttgaatacggttaaattcacacttttatataatttcttcctgtcccatctcccattctctcacatcagaatattctaatcatcactgcccttaacatatatatatatatatttataactttccgatcattccttctgctttgtaaactaatccaatcattctctaatgaattattccctaatatagagcttctttatttattgtgatttcttgtttcttacccttctcaaggtttaggaaaaagtttaggtccccatttgttatgtatttacttcccactctgaacggatccattttgaacatgttttctattttttggaaaagtttagagaattctttgcttttctcacatatcttgattgcatattttttataacaaaacaatgaaacaattttgaagaatt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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