2024-05-03 20:33:19, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001351904 1120 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Homeobox domain-containing protein (tab-1), mRNA. ACCESSION NM_001351904 VERSION NM_001351904.3 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1120) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 1120) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1120) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 1120) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003280). On May 27, 2020 this sequence version replaced NM_001351904.2. FEATURES Location/Qualifiers source 1..1120 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="II" gene 1..1120 /gene="tab-1" /locus_tag="CELE_F31E8.3" /db_xref="GeneID:185156" /db_xref="WormBase:WBGene00006380" CDS 435..1019 /gene="tab-1" /locus_tag="CELE_F31E8.3" /standard_name="F31E8.3b" /note="Confirmed by transcript evidence" /codon_start=1 /product="Homeobox domain-containing protein" /protein_id="NP_001338827.1" /db_xref="GeneID:185156" /db_xref="GOA:A0A1X7RC60" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR017970" /db_xref="InterPro:IPR020479" /db_xref="UniProtKB/TrEMBL:A0A1X7RC60" /db_xref="WormBase:WBGene00006380" /translation="
MITPVSSFSIDDLLRGHSNEIQRILKLDQTSPTPQSSSDEGSEKSSISVMSVPLTNELTPTITPALSDQLWLAAAAFPIEHSLLLAQRNGVFPGFWSTADQIRLSNATKAYRRLSSRRKARTVFSDQQLQGLERRFESQRYLSTPERIELANALNLSETQVKTWFQNRRMKHKKVVRKDDNSVDDDNGNDNESE"
misc_feature order(786..800,804..806,855..857,873..875,912..914, 918..923,930..935,939..947,951..956) /gene="tab-1" /locus_tag="CELE_F31E8.3" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(792..794,801..803,921..923,930..935,942..944) /gene="tab-1" /locus_tag="CELE_F31E8.3" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 795..953 /gene="tab-1" /locus_tag="CELE_F31E8.3" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
atcaaaactggcaagaaaagaagactccagaccatatacaaaaaatgaacacgtcatcataatacacgactgatcgaaaatgacacaactgattagtttcaatattttattctagtactgaacattacgagacaatcaatttccatattttgctcatcgtcacttaagtggttgtttattctttcatcaaccgcctacaatattgcctacggcaatactgtcattcacaatcattatccctctcatcaactcttttttcttcttctccttgtcgtctttcacgggaccttcatctctattcgccgactccgcccccttccgatgccgtctgaagctccacccattgtgctcctatgggagcaccatattaccgtgttagctcatttacacgagaatcttacctcccgtaaaataatcttcaaacttatttgaaaatgataactcctgtatcaagtttttcaattgatgatcttcttcgtgggcattcaaacgaaattcaaagaattctgaagcttgatcaaacatcgcccactccccaatcaagttcagatgagggatcagaaaaatcatcgatatccgtaatgtcagttccattgacaaatgaattaactcccacaatcactcctgctctttctgatcagctttggcttgcagcagcagcgtttccaatagaacatagtctcttgttggctcaacgaaatggagtttttcctggattctggtcaacagctgatcagattcgattgtcaaatgcaactaaagcgtatagaagattgagttcgcgaagaaaagcaagaacagtgttcagtgatcagcaactacaaggattggaacgaagatttgaatcccaaagatatctgagtactcctgagagaattgaattggcaaatgctctcaatttgagtgaaactcaagttaaaacatggtttcaaaaccgacgaatgaagcacaagaaagttgtcagaaaagatgataatagtgtggatgacgacaatggaaatgataatgagagcgaataagtatatatatatttaccggtagattgtcttttctctatgaatatttatttaaagaatattgatgtattatattattgcatgtccaaataaagtcaaatttc
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]