2024-05-03 17:35:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001083275 1042 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Homeobox protein ceh-22 (ceh-22), partial mRNA. ACCESSION NM_001083275 VERSION NM_001083275.4 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1042) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 1042) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1042) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 1042) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003283). On May 27, 2020 this sequence version replaced NM_001083275.3. COMPLETENESS: incomplete on the 5' end. FEATURES Location/Qualifiers source 1..1042 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="V" gene <1..1042 /gene="ceh-22" /locus_tag="CELE_F29F11.5" /db_xref="GeneID:179485" /db_xref="WormBase:WBGene00000445" CDS 1..852 /gene="ceh-22" /locus_tag="CELE_F29F11.5" /standard_name="F29F11.5c" /note="Partially confirmed by transcript evidence" /codon_start=1 /product="Homeobox protein ceh-22" /protein_id="NP_001076744.1" /db_xref="EnsemblGenomes-Gn:WBGene00000445" /db_xref="EnsemblGenomes-Tr:F29F11.5a" /db_xref="GeneID:179485" /db_xref="GOA:P41936" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR017970" /db_xref="InterPro:IPR020479" /db_xref="UniProtKB/Swiss-Prot:P41936" /db_xref="WormBase:WBGene00000445" /translation="
MQTYAFSRLEAKWDTLLPTDTNLQCSTWPDSIPLLAGYSATPTFSFDPCTYGSYDPSAYFASNGIAGSMYTLPDQFPRSENDMLDNSNTSNGNKSDKDGIKLEDEDEILEDEENDEEDDGTGKRKKRKRRVLFTKAQTYELERRFRSQKYLSAPEREALAMQIRLTPTQVKIWFQNHRYKTKKSHTDKPINAALLTTMPNAFSSQSTAASFPTRAMPIPMLVRDSSARSSDISSTSPYTVAFGSANSGYLPTPSAYLPATSGYFSNGPSAASSYMTNTQWWPS"
misc_feature 397..546 /gene="ceh-22" /locus_tag="CELE_F29F11.5" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
atgcaaacttatgcattttccagactcgaagctaaatgggacactctacttcccaccgacaccaatttacaatgttccacgtggcctgatagcattccattacttgcaggatattctgctactcccacattttccttcgatccttgcacatacggcagctatgatccatctgcatattttgcttcaaacggaattgctggttccatgtacactctacctgatcaatttccacgttctgagaatgatatgctagataacagcaatacatcaaatggaaacaaaagcgataaagatggaatcaaacttgaagatgaagatgaaattctggaagatgaagagaatgacgaagaagatgatggaactggaaaacggaaaaagagaaagcgtcgcgttttgttcacaaaagcacaaacttatgaacttgaacgacgattccgctcgcaaaaatatctgagcgcgcctgaacgtgaagctcttgcaatgcaaattcgacttactccgactcaagtaaaaatttggttccaaaatcatcgatacaaaacaaaaaaaagtcatacggataagccaataaacgcggcgcttcttaccacaatgcccaatgcattttcaagtcaatcgacagcggccagttttccaacaagagcaatgccgataccaatgctagtccgtgactcttctgctcgttcttcggacatttcctcaacatctccatacacggtagcatttggaagtgccaattcaggatacctaccaacaccttccgcctacctcccagccacttccgggtatttttcaaacggaccttcagcagcttcttcctacatgaccaatactcaatggtggccttcttgatttctctaatactctataccatgtcaatttttcccagaatacatctcgtttctcacttttaattgctcatttctcattattacatattttctccgaattgtgatctacaaatttataacaacaaatcagttcggactaccggtttttgaaatattttatcagttatgcccatacacatgttttatgtaaa
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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