2024-05-03 13:34:40, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001026038 1317 bp mRNA linear INV 22-NOV-2023 DEFINITION Caenorhabditis elegans Homeobox protein pal-1 (pal-1), mRNA. ACCESSION NM_001026038 VERSION NM_001026038.7 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 1317) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 1317) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (22-NOV-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1317) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (29-OCT-2023) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 1317) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003281). On Feb 2, 2021 this sequence version replaced NM_001026038.6. FEATURES Location/Qualifiers source 1..1317 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="III" gene 1..1317 /gene="pal-1" /locus_tag="CELE_C38D4.6" /db_xref="GeneID:175638" /db_xref="WormBase:WBGene00003912" CDS 2..814 /gene="pal-1" /locus_tag="CELE_C38D4.6" /standard_name="C38D4.6a" /note="Confirmed by transcript evidence" /codon_start=1 /product="Homeobox protein pal-1" /protein_id="NP_001021209.1" /db_xref="GeneID:175638" /db_xref="WormBase:WBGene00003912" /translation="
MSVDVKSDFSENESSSTPSPTTVPADVTWPHYPMMPFMQPHPLREKMLQPTFDPQIYGRWSQMGDTGFYGHPDLYPFGLPQLAANGQIPAVEAVDVKPPLSNGSSSSDSGMYPSPSDMMTPFPSTSSGAASSSELSAAAAAAANYQMRAATCYQQSVWPFMDYQQFQGFSWKMPLGNNHGKDRRSSSDGKTLPTGPGTNNVRVRTADKYRMVYSDYQRLELEKEFHTSPFITSDRKSQLSTMLSLTERQIKIWFQNRRAKDRRDKQKIRL"
misc_feature order(623..634,638..640,689..691,707..709,746..748, 752..757,764..769,773..781,785..790) /gene="pal-1" /locus_tag="CELE_C38D4.6" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(626..628,635..637,755..757,764..769,776..778) /gene="pal-1" /locus_tag="CELE_C38D4.6" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 629..787 /gene="pal-1" /locus_tag="CELE_C38D4.6" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
aatgtcggtcgatgtcaagtcggatttttcggaaaacgagtcctcatcaacaccttcaccaacaacagttccagcagatgtcacgtggcctcactatccaatgatgccattcatgcaaccacatcctctgagagaaaagatgctgcaaccaacatttgatccacaaatctatggaaggtggtcacaaatgggtgatactggtttttacggacatccggatctctatccattcggccttccacaactcgctgccaacggacaaattccagcagtagaagccgttgatgtgaagccaccgctttcgaatggaagtagcagtagtgatagtggaatgtatccatcaccgagtgatatgatgacaccgttcccatcaacatcatctggagctgcatcttcttcagagctttcagcagctgctgctgctgcagccaactaccagatgagagctgccacgtgttatcagcaatctgtttggccgtttatggattatcaacagtttcagggattctcgtggaaaatgcctcttggaaacaatcatggaaaggatcgaagatcaagcagtgatgggaaaacattaccaacgggacctggaacgaataatgtccgtgtacgaacagctgacaaataccgtatggtttactcggattatcaacgccttgaactggaaaaagaattccatacatcgccattcataacatcagatcgcaagtcccaattgtcgacgatgttaagcttgacagaacgacaaatcaagatttggtttcaaaataggcgtgcaaaggatcgtcgtgacaaacagaagattcggctataagtactcatctacttacaaagaaaatgtacaaaaattctgggaattttcatatttttctagaatattgtacacatttattatatttttacatttctctcgcttgaatacggttaaattcacacttttatataatttcttcctgtcccatctcccattctctcacatcagaatattctaatcatcactgcccttaacatatatatatatatatttataactttccgatcattccttctgctttgtaaactaatccaatcattctctaatgaattattccctaatatagagcttctttatttattgtgatttcttgtttcttacccttctcaaggtttaggaaaaagtttaggtccccatttgttatgtatttacttcccactctgaacggatccattttgaacatgttttctattttttggaaaagtttagagaattctttgcttttctcacatatcttgattgcatattttttataacaaaacaatgaaacaattttgaagaat
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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